BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0717500 Os02g0717500|AK067050
         (358 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48020.1  | chr5:19462888-19464790 REVERSE LENGTH=356          551   e-157

>AT5G48020.1 | chr5:19462888-19464790 REVERSE LENGTH=356
          Length = 355

 Score =  551 bits (1420), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/357 (73%), Positives = 299/357 (83%), Gaps = 4/357 (1%)

Query: 1   MDLPLVDLAPYLDXXXXXXXXXXXXXXXXLCATVSASLRDTGALLVKDPRCPAADNDRFL 60
           M+LP+VDL+ YLD                 C  VS  L++TGAL+VKDPRC A DNDRF+
Sbjct: 1   MELPVVDLSSYLDFSGDELGSDLLES----CRQVSRILKETGALIVKDPRCCAQDNDRFI 56

Query: 61  DVVEHYFARSADSKCLQERPNLHYQVGVTPEGVEVPRSLVDKEMQDKIKSMPEEFQPATP 120
           D++E+YF +  D K LQ+RPNLHYQVG TPEGVEVPRSLVD+EMQ+K  +MP E++P  P
Sbjct: 57  DMMENYFEKPDDFKRLQQRPNLHYQVGATPEGVEVPRSLVDEEMQEKFNTMPNEYKPHIP 116

Query: 121 KGPDPKWRYMWRVGPRPANTRFKELNSEPVIPDGLPEWKETMDSWGSKMISAIEVVAEMA 180
           KGPD KWRYMWRVGPRP+NTRFKELNSEPV+P+G P W+E MDSWG KMISA+EVVAEMA
Sbjct: 117 KGPDHKWRYMWRVGPRPSNTRFKELNSEPVVPEGFPGWEEVMDSWGYKMISAVEVVAEMA 176

Query: 181 AVGFGLPKDAFTSLMKEGPHLLAPTGSDLERHGSEGTVFAGFHYDLNFLTIHGRSRFPGL 240
           A+GFGLPKDAFTSLMK+GPHLLAPTGSDL  +  EGT+FAG+HYDLNFLTIHGRSRFPGL
Sbjct: 177 AIGFGLPKDAFTSLMKQGPHLLAPTGSDLNCYNEEGTIFAGYHYDLNFLTIHGRSRFPGL 236

Query: 241 NIWLRNGKKMEVKVPVGCLLIQSGKQLEWLTGGECLAGMHEVVVTKRTLEAIALAREQNR 300
            IWLRNG+K+ VKVPVGCLLIQ+GKQ+EWLT GEC+AGMHEVVVT +T +AI LA+EQNR
Sbjct: 237 YIWLRNGEKVAVKVPVGCLLIQAGKQIEWLTAGECIAGMHEVVVTSKTKDAITLAKEQNR 296

Query: 301 SLWRVSSTLFAHIASDATLKPLGHFAEASDAHSYPPICAGDYVEQELSVINLKGKNG 357
           SLWRVSSTLFAHIASDA LKPLGHFAE+S A  YP I AG+YVEQELSVINLKG  G
Sbjct: 297 SLWRVSSTLFAHIASDAELKPLGHFAESSLASKYPAIPAGEYVEQELSVINLKGNKG 353



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,064,806
Number of extensions: 351147
Number of successful extensions: 782
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,364,969
Effective search space: 2158162002
Effective search space used: 2158162002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)