BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0717100 Os02g0717100|AK063741
         (223 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19630.1  | chr5:6628147-6629937 REVERSE LENGTH=229            256   4e-69

>AT5G19630.1 | chr5:6628147-6629937 REVERSE LENGTH=229
          Length = 228

 Score =  256 bits (655), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 121/222 (54%), Positives = 156/222 (70%), Gaps = 1/222 (0%)

Query: 1   MEWTTVEAANGAKLSVRLFKPXXX-XXXXXXXXXXXXXXHPYTILGGVQGLLRGIAEGVA 59
           +E  +V++  G KL  R+FKP                  HP+++LGG Q LL+GIA  +A
Sbjct: 7   VESCSVDSEEGVKLHTRIFKPRNEGEEVSDDENLVIVLVHPFSLLGGCQALLKGIASELA 66

Query: 60  RRGYRAVTFDMRGAGRSTGRASLTGSTEVGDVEAVCRWVADNLNPRGVLLVXXXXXXXXX 119
            +G+++VTFD RGAG+STGRA+LTG  EV DV AVCRW+  N++   +LLV         
Sbjct: 67  SKGFKSVTFDTRGAGKSTGRATLTGFAEVKDVVAVCRWLCQNVDAHRILLVGSSAGAPIA 126

Query: 120 XXXVDKVDQVIGYVSIGYPFGLMASVLFGRHHNAILKSEKPKLFVMGTKDGFTSVKQLQN 179
              V++V+QV+GYVS+GYPFGLMAS+LFGRHH AIL S KPKLFVMGT+DGFTSV QL+ 
Sbjct: 127 GSAVEQVEQVVGYVSLGYPFGLMASILFGRHHKAILSSPKPKLFVMGTQDGFTSVSQLKK 186

Query: 180 KLKNAAGRVDTHLIEGAGHFQMEGPAFDARMVDLIVNFIKSL 221
           KLK+A GR +THLIEG  HFQMEGP +D+++ D+I  FI SL
Sbjct: 187 KLKSAVGRTETHLIEGVSHFQMEGPEYDSQVTDIICKFISSL 228



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,903,646
Number of extensions: 132550
Number of successful extensions: 354
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 128
Effective length of database: 8,502,049
Effective search space: 1088262272
Effective search space used: 1088262272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)