BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0716500 Os02g0716500|AK065239
(388 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12120.1 | chr3:3860592-3861743 REVERSE LENGTH=384 556 e-159
AT2G29980.1 | chr2:12781787-12784946 REVERSE LENGTH=387 229 2e-60
AT3G11170.1 | chr3:3499959-3502126 FORWARD LENGTH=447 218 3e-57
AT5G05580.1 | chr5:1664331-1666345 FORWARD LENGTH=436 211 5e-55
AT4G30950.1 | chr4:15057278-15059673 REVERSE LENGTH=449 95 7e-20
>AT3G12120.1 | chr3:3860592-3861743 REVERSE LENGTH=384
Length = 383
Score = 556 bits (1434), Expect = e-159, Method: Compositional matrix adjust.
Identities = 266/394 (67%), Positives = 314/394 (79%), Gaps = 17/394 (4%)
Query: 1 MGAGGRM---TEKEREEQQKLLGRAGNGAAVQRSPTDKPPFTLGQIKKAIPPHCFQRSVI 57
MGAGGRM T ++ E +R P +KPPF++G +KKAIPPHCF+RS+
Sbjct: 1 MGAGGRMPVPTSSKKSETD----------TTKRVPCEKPPFSVGDLKKAIPPHCFKRSIP 50
Query: 58 KSFSYVVHDLVIVAALLYFALVMIPVLPSGMEFAAWPLYWIAQGCVLTGVWVIAHECGHH 117
+SFSY++ D++I + Y A +LP + + AWPLYW QGCVLTG+WVIAHECGHH
Sbjct: 51 RSFSYLISDIIIASCFYYVATNYFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHH 110
Query: 118 AFSDYSVLDDIVGLVLHSSLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAMAWYTP 177
AFSDY LDD VGL+ HS LLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSA+ WY
Sbjct: 111 AFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAIKWYGK 170
Query: 178 YVYHNPIGRLVHIFVQLTLGWPLYLAFNVSGRPYPRFACHFDPYGPIYNDRERVQIFISD 237
Y+ +NP+GR++ + VQ LGWPLYLAFNVSGRPY FACHF P PIYNDRER+QI++SD
Sbjct: 171 YL-NNPLGRIMMLTVQFVLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRERLQIYLSD 229
Query: 238 VGVVSAGLALFKLSSAFGFWWVVRVYGVPLLIVNAWLVLITYLQHTHPALPHYDSSEWDW 297
G+++ L++ ++A G ++ +YGVPLLIVNA+LVLITYLQHTHP+LPHYDSSEWDW
Sbjct: 230 AGILAVCFGLYRYAAAQGMASMICLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDW 289
Query: 298 LRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIRPILGEYYQFDPT 357
LRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHY+AMEATKAI+PILG+YYQFD T
Sbjct: 290 LRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQFDGT 349
Query: 358 PVAKATWREAKECIYVEPE---DNKGVFWYNNKF 388
P A +REAKECIYVEP+ D KGV+WYNNK
Sbjct: 350 PWYVAMYREAKECIYVEPDREGDKKGVYWYNNKL 383
>AT2G29980.1 | chr2:12781787-12784946 REVERSE LENGTH=387
Length = 386
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 193/336 (57%), Gaps = 22/336 (6%)
Query: 22 AGNGAAVQR-SPTDKPPFTLGQIKKAIPPHCFQRSVIKSFSYVVHDLVIVAALLYFALVM 80
AG+ +R P+ +PPF +G I+ AIP HC+ +S ++S SYVV D++ VAAL A+ +
Sbjct: 17 AGDRKKEERFDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYV 76
Query: 81 IPVLPSGMEFAAWPLYWIAQGCVLTGVWVIAHECGHHAFSDYSVLDDIVGLVLHSSLLVP 140
+ WPLYW AQG + ++V+ H+CGH +FSD +L+ +VG +LHS +LVP
Sbjct: 77 -------DSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVP 129
Query: 141 YFSWKYSHRRHHSNTGSLERDEVFVPKQKSAMAWYTPYVYHNPIGRLVHIFVQL-TLGWP 199
Y W+ SHR HH N G +E DE +VP + Y R++ V L L +P
Sbjct: 130 YHGWRISHRTHHQNHGHVENDESWVPLPERV------YKKLPHSTRMLRYTVPLPMLAYP 183
Query: 200 LYLAFNVSGRPYPRFACHFDPYGPIYNDRERVQIFISDVGVVSAGLALFKLSSAFGFWWV 259
LYL + G+ HF+PY ++ ER I S ++L LS FG V
Sbjct: 184 LYLCYRSPGKE----GSHFNPYSSLFAPSERKLIATSTTCWSIMFVSLIALSFVFGPLAV 239
Query: 260 VRVYGVPLLIVNAWLVLITYLQH--THPALPHYDSSEWDWLRGALATVDRDYGILNKVFH 317
++VYGVP +I WL +TYL H LP Y EW +LRG L T+DRDYGI N + H
Sbjct: 240 LKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHH 299
Query: 318 NITDTHVAHHLFSTMPHYHAMEATKAIRPILGEYYQ 353
+I THV HHLF +PHYH ++ATKA + +LG YY+
Sbjct: 300 DI-GTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYR 334
>AT3G11170.1 | chr3:3499959-3502126 FORWARD LENGTH=447
Length = 446
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 175/325 (53%), Gaps = 19/325 (5%)
Query: 31 SPTDKPPFTLGQIKKAIPPHCFQRSVIKSFSYVVHDLVIVAALLYFALVMIPVLPSGMEF 90
P PPF L I+ AIP HC+ ++ KS SYVV D+ IV AL A + +
Sbjct: 89 DPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYL-------NNW 141
Query: 91 AAWPLYWIAQGCVLTGVWVIAHECGHHAFSDYSVLDDIVGLVLHSSLLVPYFSWKYSHRR 150
WPLYW+AQG + ++V+ H+CGH +FS+ L+ +VG +LHSS+LVPY W+ SHR
Sbjct: 142 IVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRT 201
Query: 151 HHSNTGSLERDEVFVPKQKSAMAWYTPYVYHNPIGRLVHIFVQLTLGWPLYLAFNVSGRP 210
HH N G +E DE + P + P + L +P YL G+
Sbjct: 202 HHQNHGHVENDESWHPMSEKIYN-----TLDKPTRFFRFTLPLVMLAYPFYLWARSPGKK 256
Query: 211 YPRFACHFDPYGPIYNDRERVQIFISDVGVVSAGLALFKLSSAFGFWWVVRVYGVPLLIV 270
H+ P ++ +ER + S + L L+ G ++++YG+P I
Sbjct: 257 ----GSHYHPDSDLFLPKERKDVLTSTACWTAMAALLVCLNFTIGPIQMLKLYGIPYWIN 312
Query: 271 NAWLVLITYLQH--THPALPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHL 328
WL +TYL H LP Y EW +LRG L T+DRDYG++N + H+I THV HHL
Sbjct: 313 VMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDI-GTHVIHHL 371
Query: 329 FSTMPHYHAMEATKAIRPILGEYYQ 353
F +PHYH +EAT+A +P+LG+YY+
Sbjct: 372 FPQIPHYHLVEATEAAKPVLGKYYR 396
>AT5G05580.1 | chr5:1664331-1666345 FORWARD LENGTH=436
Length = 435
Score = 211 bits (537), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 178/326 (54%), Gaps = 21/326 (6%)
Query: 31 SPTDKPPFTLGQIKKAIPPHCFQRSVIKSFSYVVHDLVIVAALLYFALVMIPVLPSGMEF 90
P PPF L I+ AIP HC+ ++ S SYVV D+ IV L A +
Sbjct: 82 DPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYF-------NNW 134
Query: 91 AAWPLYWIAQGCVLTGVWVIAHECGHHAFSDYSVLDDIVGLVLHSSLLVPYFSWKYSHRR 150
WPLYW AQG + ++V+ H+CGH +FS+ L+ + G +LHSS+LVPY W+ SHR
Sbjct: 135 LLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRT 194
Query: 151 HHSNTGSLERDEVFVPKQKSAMAWYTPYVYHNPIGRLVHIFVQLTLGWP-LYLAFNVSGR 209
HH N G +E DE + P +S +Y N + + +F + TL +P L F + R
Sbjct: 195 HHQNHGHVENDESWHPLPES--------IYKN-LEKTTQMF-RFTLPFPMLAYPFYLWNR 244
Query: 210 PYPRFACHFDPYGPIYNDRERVQIFISDVGVVSAGLALFKLSSAFGFWWVVRVYGVPLLI 269
+ H+ P ++ +E+ + S + L L+ G ++++YG+P I
Sbjct: 245 SPGKQGSHYHPDSDLFLPKEKKDVLTSTACWTAMAALLVCLNFVMGPIQMLKLYGIPYWI 304
Query: 270 VNAWLVLITYLQH--THPALPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHH 327
WL +TYL H LP Y EW +LRG L T+DRDYG +N + H+I THV HH
Sbjct: 305 FVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHH 363
Query: 328 LFSTMPHYHAMEATKAIRPILGEYYQ 353
LF +PHYH +EAT+A +P+LG+YY+
Sbjct: 364 LFPQIPHYHLVEATEAAKPVLGKYYR 389
>AT4G30950.1 | chr4:15057278-15059673 REVERSE LENGTH=449
Length = 448
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 144/337 (42%), Gaps = 32/337 (9%)
Query: 39 TLGQIKKAIPPHCFQRSVIKSFSYVVHDLVIVAALLYFALVMIPVLPSGMEFAAWPLYWI 98
TL I +P F+ +K+ V+ I L MI P + PL W
Sbjct: 106 TLKDIMDTLPKEVFEIDDLKALKSVL----ISVTSYTLGLFMIAKSP----WYLLPLAWA 157
Query: 99 AQGCVLTGVWVIAHECGHHAFSDYSVLDDIVGLVLHSSLLVPYFSWKYSHRRHHSNTGSL 158
G +TG +VI H+C H +FS +++DIVG + L+ PY W++ H RHH+ T L
Sbjct: 158 WTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNML 217
Query: 159 ERDEVFVPKQKSAMAWYTPYVYHNPIGRLVHIFVQLTLGWPLYLAFNVSGRPYPRFACHF 218
D + P +P+ R IF + L +A V+ HF
Sbjct: 218 VHDTAWQPVPPEEFE-------SSPVMRKAIIFGYGPIRPWLSIAHWVNW--------HF 262
Query: 219 DPYGPIYNDRERVQIFISDV-GVVSAGLALFKLSSAFGFWWVVRVYGVPLLIVNAWLVLI 277
+ ++ RV+I ++ V ++ G L W V+ + +P L + W+
Sbjct: 263 NLKKFRASEVNRVKISLACVFAFMAVGWPLIVYKVGILGW--VKFWLMPWLGYHFWMSTF 320
Query: 278 TYLQHTHPALPHYDSSEWDWLRGAL-ATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYH 336
T + HT P +P + EW+ + L TV DY ++ + + H+ HH+ +P Y+
Sbjct: 321 TMVHHTAPHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYN 380
Query: 337 AMEATKAIRPILGEYYQFDPTPVAKATWREAKECIYV 373
A ++I+ G+Y T +A WR K + V
Sbjct: 381 LRAAHESIQENWGKY-----TNLATWNWRLMKTIMTV 412
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.140 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,275,782
Number of extensions: 407592
Number of successful extensions: 1094
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1078
Number of HSP's successfully gapped: 6
Length of query: 388
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 288
Effective length of database: 8,364,969
Effective search space: 2409111072
Effective search space used: 2409111072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)