BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0715400 Os02g0715400|013-046-F07
         (101 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52420.1  | chr3:19429775-19429969 FORWARD LENGTH=65            49   5e-07

>AT3G52420.1 | chr3:19429775-19429969 FORWARD LENGTH=65
          Length = 64

 Score = 48.9 bits (115), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 16 KTAVVVTGGLVLAWFTMESAFKPFLDRLRGALTRNTDPARDPDE 59
          K A VV   + L W  +E AFKPFLD+ R ++ ++ DP +DPD+
Sbjct: 8  KQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKS-DPTKDPDD 50



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,203,335
Number of extensions: 31642
Number of successful extensions: 62
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 101
Length of database: 11,106,569
Length adjustment: 71
Effective length of query: 30
Effective length of database: 9,160,033
Effective search space: 274800990
Effective search space used: 274800990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)