BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0714100 Os02g0714100|AK071194
         (338 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51520.1  | chr3:19110739-19112518 FORWARD LENGTH=315          381   e-106

>AT3G51520.1 | chr3:19110739-19112518 FORWARD LENGTH=315
          Length = 314

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 178/298 (59%), Positives = 224/298 (75%), Gaps = 1/298 (0%)

Query: 41  TTVALALWLGAIHXXXXXXXXXXXXXPRRVAAMVLATQLFFMFAPVNDMSRLGRKIARFI 100
           + +A+A+WLGAIH             P  ++ MVL     F+F P++  S+ GRK+AR+I
Sbjct: 18  SIIAMAIWLGAIHFNVALVLCSLIFLPPSLSLMVLGLLSLFIFIPIDHRSKYGRKLARYI 77

Query: 101 SKCVIGYFPVTLHVEDYKAFDPNRAYVFGYEPHSVLPIALGVLLELVGFMPLPKIKVLAS 160
            K    YFPV+L+VEDY+AF PNRAYVFGYEPHSVLPI +  L +L GFMP+P IKVLAS
Sbjct: 78  CKHACNYFPVSLYVEDYEAFQPNRAYVFGYEPHSVLPIGVVALCDLTGFMPIPNIKVLAS 137

Query: 161 SAVFYTPFLRQIWTWLGLVPASRKNFYSYLKAGYSCVIVPGGVQEMLHMDHDSEVAFLKS 220
           SA+FYTPFLR IWTWLGL  ASRKNF S L +GYSCV+VPGGVQE  HM HD+E  FL  
Sbjct: 138 SAIFYTPFLRHIWTWLGLTAASRKNFTSLLDSGYSCVLVPGGVQETFHMQHDAENVFLSR 197

Query: 221 RKGFVKIAMETGSPLVPVFAFGQSYVYKWWRPGGKLIVKIARAIKFTPIMFWGKFGTPIP 280
           R+GFV+IAME GSPLVPVF FGQ+ VYKWW+P   L +K++RAI+FTPI FWG FG+P+P
Sbjct: 198 RRGFVRIAMEQGSPLVPVFCFGQARVYKWWKPDCDLYLKLSRAIRFTPICFWGVFGSPLP 257

Query: 281 FATPMHVVVGRPIEVKKNAQPTFDEINEVHEQFVVALQELFEKYKTKAGYPNLHLRVL 338
              PMHVVVG+PIEV K  +PT +EI + H Q+V AL++LFE++K++ GY +L L++L
Sbjct: 258 CRQPMHVVVGKPIEVTKTLKPTDEEIAKFHGQYVEALRDLFERHKSRVGY-DLELKIL 314



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.142    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,607,340
Number of extensions: 274691
Number of successful extensions: 723
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 3
Length of query: 338
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 239
Effective length of database: 8,392,385
Effective search space: 2005780015
Effective search space used: 2005780015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)