BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0713400 Os02g0713400|AK071251
(331 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G17420.1 | chr2:7564357-7566219 FORWARD LENGTH=379 486 e-138
AT4G35460.1 | chr4:16842218-16843740 FORWARD LENGTH=376 465 e-131
AT2G41680.1 | chr2:17376349-17379028 REVERSE LENGTH=530 307 5e-84
>AT2G17420.1 | chr2:7564357-7566219 FORWARD LENGTH=379
Length = 378
Score = 486 bits (1251), Expect = e-138, Method: Compositional matrix adjust.
Identities = 232/326 (71%), Positives = 266/326 (81%), Gaps = 4/326 (1%)
Query: 10 RTRVCIIGSGPSAHTAAIYAARAELKPVLFEGWLANDIAAGGQLTTTTDVENFPGFPEGI 69
+T+VCI+GSGP+AHTAAIYA+RAELKP+LFEGW+ANDIA GGQLTTTTDVENFPGFPEGI
Sbjct: 53 KTKVCIVGSGPAAHTAAIYASRAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGI 112
Query: 70 LGGELMDRCRAQSLRFGTSIISETVTAVDFSARPFRVASDSXXXXXXXXXXXXXXXXRRL 129
LG +++++ R QS RFGT+I +ETV VDFS++PF++ +DS +RL
Sbjct: 113 LGIDIVEKFRKQSERFGTTIFTETVNKVDFSSKPFKLFTDSRTVLADSVIISTGAVAKRL 172
Query: 130 HFAGSD----AYWNRGISACAVCDGAAPIFRNKPIAVIGGGDSAMEESNFLTKYGSHVYI 185
F GS +WNRGISACAVCDGAAPIFRNKP+ VIGGGDSAMEE+NFLTKYGS VYI
Sbjct: 173 SFTGSGEGNGGFWNRGISACAVCDGAAPIFRNKPLVVIGGGDSAMEEANFLTKYGSKVYI 232
Query: 186 IHRRNTFRASKIMQARALSNPKIQVFWDSXXXXXXXXXXXXXXXXXKVKNLVTGKISDLQ 245
IHRR+TFRASKIMQ RALSNPKI+V W+S KVKN+VTG +SDL+
Sbjct: 233 IHRRDTFRASKIMQQRALSNPKIEVIWNSAVVEAYGDENGRVLGGLKVKNVVTGDVSDLK 292
Query: 246 VSGLFFAIGHEPATKFLGGQLELDADGYVATKPGSTHTSVKGVFAAGDVQDKKYRQAITA 305
VSGLFFAIGHEPATKFL GQLELD DGYV TKPG+T TSV GVFAAGDVQDKKYRQAITA
Sbjct: 293 VSGLFFAIGHEPATKFLDGQLELDEDGYVVTKPGTTKTSVVGVFAAGDVQDKKYRQAITA 352
Query: 306 AGSGCMAALDAEHYLQEVGAQEGKAD 331
AG+GCMAALDAEHYLQE+G+QEGK+D
Sbjct: 353 AGTGCMAALDAEHYLQEIGSQEGKSD 378
>AT4G35460.1 | chr4:16842218-16843740 FORWARD LENGTH=376
Length = 375
Score = 465 bits (1197), Expect = e-131, Method: Compositional matrix adjust.
Identities = 234/325 (72%), Positives = 264/325 (81%), Gaps = 4/325 (1%)
Query: 11 TRVCIIGSGPSAHTAAIYAARAELKPVLFEGWLANDIAAGGQLTTTTDVENFPGFPEGIL 70
TR+CI+GSGP+AHTAAIYAARAELKP+LFEGW+ANDIA GGQLTTTTDVENFPGFPEGIL
Sbjct: 51 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGIL 110
Query: 71 GGELMDRCRAQSLRFGTSIISETVTAVDFSARPFRVASDSXXXXXXXXXXXXXXXXRRLH 130
G EL D+ R QS RFGT+I +ETVT VDFS++PF++ +DS +RL
Sbjct: 111 GVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILATGAVAKRLS 170
Query: 131 FAGSD----AYWNRGISACAVCDGAAPIFRNKPIAVIGGGDSAMEESNFLTKYGSHVYII 186
F GS +WNRGISACAVCDGAAPIFRNKP+AVIGGGDSAMEE+NFLTKYGS VYII
Sbjct: 171 FVGSGEASGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYII 230
Query: 187 HRRNTFRASKIMQARALSNPKIQVFWDSXXXXXXXXXXXXXXXXXKVKNLVTGKISDLQV 246
HRR+ FRASKIMQ RALSNPKI V W+S KVKN+VTG +SDL+V
Sbjct: 231 HRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKV 290
Query: 247 SGLFFAIGHEPATKFLGGQLELDADGYVATKPGSTHTSVKGVFAAGDVQDKKYRQAITAA 306
SGLFFAIGHEPATKFL G +ELD+DGYV TKPG+T TSV GVFAAGDVQDKKYRQAITAA
Sbjct: 291 SGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAA 350
Query: 307 GSGCMAALDAEHYLQEVGAQEGKAD 331
G+GCMAALDAEHYLQE+G+Q+GK+D
Sbjct: 351 GTGCMAALDAEHYLQEIGSQQGKSD 375
>AT2G41680.1 | chr2:17376349-17379028 REVERSE LENGTH=530
Length = 529
Score = 307 bits (787), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 149/315 (47%), Positives = 209/315 (66%), Gaps = 2/315 (0%)
Query: 6 GAPLRTRVCIIGSGPSAHTAAIYAARAELKPVLFEGWLANDIAAGGQLTTTTDVENFPGF 65
G + V IIGSGP+ +TAAIYAARA LKPV+FEG+ + GGQL TTT+VENFPGF
Sbjct: 79 GGEIIENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQMGGVP-GGQLMTTTEVENFPGF 137
Query: 66 PEGILGGELMDRCRAQSLRFGTSIISETVTAVDFSARPFRVASDSXXXXXXXXXXXXXXX 125
P+GI G +LM++ R Q+ R+G + E V ++ + PF V +
Sbjct: 138 PDGITGPDLMEKMRKQAERWGAELYPEDVESLSVTTAPFTVQTSERKVKCHSIIYATGAT 197
Query: 126 XRRLHFAGSDAYWNRGISACAVCDGAAPIFRNKPIAVIGGGDSAMEESNFLTKYGSHVYI 185
RRL + +W+RGISACA+CDGA+P+F+ + +AV+GGGD+A EE+ +LTKY HV++
Sbjct: 198 ARRLRLPREEEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEALYLTKYARHVHL 257
Query: 186 IHRRNTFRASKIMQARALSNPKIQVFWDSXXXXXXXXXXXXXXXXXKVKNLVTGKISDLQ 245
+ RR+ RASK MQ R ++NP I V +++ ++ L TG+ ++L+
Sbjct: 258 LVRRDQLRASKAMQDRVINNPNITVHYNTETVDVLSNTKGQMSGIL-LRRLDTGEETELE 316
Query: 246 VSGLFFAIGHEPATKFLGGQLELDADGYVATKPGSTHTSVKGVFAAGDVQDKKYRQAITA 305
GLF+ IGH P ++ L GQ+ELD+ GYV + G+++TSV+GVFAAGDVQD ++RQA+TA
Sbjct: 317 AKGLFYGIGHSPNSQLLEGQVELDSSGYVLVREGTSNTSVEGVFAAGDVQDHEWRQAVTA 376
Query: 306 AGSGCMAALDAEHYL 320
AGSGC+AAL AE YL
Sbjct: 377 AGSGCIAALSAERYL 391
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,178,487
Number of extensions: 224511
Number of successful extensions: 553
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 3
Length of query: 331
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,392,385
Effective search space: 1947033320
Effective search space used: 1947033320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)