BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0711300 Os02g0711300|AK107963
         (152 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G53540.1  | chr1:19980510-19980983 FORWARD LENGTH=158           57   5e-09
AT1G07400.1  | chr1:2275148-2275621 FORWARD LENGTH=158             50   7e-07
AT1G59860.1  | chr1:22031474-22031941 FORWARD LENGTH=156           49   1e-06

>AT1G53540.1 | chr1:19980510-19980983 FORWARD LENGTH=158
          Length = 157

 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 33/44 (75%)

Query: 21 VAGEARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRV 64
          VA      +DWRETP AHVF+ DLPGL K++V VEV DG+IL++
Sbjct: 44 VAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQI 87



>AT1G07400.1 | chr1:2275148-2275621 FORWARD LENGTH=158
          Length = 157

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 14 FPGA-GGVVAGEARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEH 70
          FP +  G  +      +DW+ET  AHVF+ DLPG+ K++V VE+ D  +L++ +G  H
Sbjct: 34 FPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKI-SGERH 90



>AT1G59860.1 | chr1:22031474-22031941 FORWARD LENGTH=156
          Length = 155

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 14 FPGAGGVVAGEARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEH 70
          FP +       AR  +DW+ET  AHVF+ DLPG+ K++V VE+ D  +L++ +G  H
Sbjct: 35 FPSSSSSAIANAR--VDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKI-SGERH 88



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.141    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,566,761
Number of extensions: 73722
Number of successful extensions: 148
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 6
Length of query: 152
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 62
Effective length of database: 8,639,129
Effective search space: 535625998
Effective search space used: 535625998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 107 (45.8 bits)