BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0711200 Os02g0711200|AK106470
         (211 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26090.1  | chr1:9020509-9022619 FORWARD LENGTH=456            130   4e-31

>AT1G26090.1 | chr1:9020509-9022619 FORWARD LENGTH=456
          Length = 455

 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 95/160 (59%), Gaps = 2/160 (1%)

Query: 40  KLVTFLXXXXXXXXXXXXXXXXXXXXXXLKTCLVIQSQDPTAEQLMGCKIGNSLTECAAN 99
           K VTFL                      L TCLVI +QDP+AE L+G KIG S T    N
Sbjct: 59  KFVTFLGKGGSGKTTAAVFAAQHYALAGLSTCLVIHNQDPSAEFLLGSKIGTSPTLINDN 118

Query: 100 LSTMKLETSKMLLEPLDRLKKVDSQINLTQXXXXXXXXXXXXXXPGMDSVCSVLALQKLL 159
           LS ++LET+KMLLEPL +LK+ D+++N+TQ              PGMDS+ S+L L++L+
Sbjct: 119 LSVIRLETTKMLLEPLKQLKQADARLNMTQGVLEGVVGEELGVLPGMDSIFSMLELERLV 178

Query: 160 NFF--STQRNSSQEEFDVVVYDCNNTEEILRLIGATERAR 197
            FF  +T++N   + FDV++YD  +TEE LR+IG + + R
Sbjct: 179 GFFRQATRKNHKGKPFDVIIYDGISTEETLRMIGLSSKTR 218



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,857,268
Number of extensions: 78925
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 117
Effective length of database: 8,529,465
Effective search space: 997947405
Effective search space used: 997947405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)