BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0711000 Os02g0711000|AK067559
         (357 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G02960.2  | chr1:667002-669773 REVERSE LENGTH=472              105   4e-23

>AT1G02960.2 | chr1:667002-669773 REVERSE LENGTH=472
          Length = 471

 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 108/188 (57%), Gaps = 23/188 (12%)

Query: 179 TSSEEEDDAQNNLALINKDVKGQTMADIFQQVFNATSMD----CFTLPVRSYGSGYYGRM 234
           +SS++E   Q+++  I+ + K Q + D F +   A+S+      F  P  S GS  YG++
Sbjct: 292 SSSDDEPSYQSSVPNIS-NQKKQFVGDRFDEAIKASSLSKEGLLFGSPKLSGGSSLYGKL 350

Query: 235 QQILQMEKDRHAEFLRQYNREQDYLG--DPKG-VTVQILSRSLEGKLTICRCLFMEKSN- 290
           QQI++ EK+   E +R+    Q  +G  D  G V V+++SR LEGKL +C+C  ++ S  
Sbjct: 351 QQIMKQEKETEMEIMRKL---QSGIGEADSSGYVDVKVMSRHLEGKLVVCKCSVIDLSGD 407

Query: 291 ---LATTGEVSTDLDMDNSSVKRTIIFSPKICDNVDLLAGNIIHIFPPWKEVKVKE--ET 345
              L  T  ++          + TIIFSPK+C +VD+  GN I ++ PWKE++V++  + 
Sbjct: 408 SLLLKNTQALAA------KETETTIIFSPKVCADVDIEIGNFIRVYAPWKELEVQKTNDV 461

Query: 346 VILCTYFS 353
           +IL +YFS
Sbjct: 462 IILSSYFS 469



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.130    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,845,228
Number of extensions: 326329
Number of successful extensions: 819
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 818
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 257
Effective length of database: 8,364,969
Effective search space: 2149797033
Effective search space used: 2149797033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)