BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0707000 Os02g0707000|J090097F05
(232 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G27820.1 | chr3:10315249-10317881 FORWARD LENGTH=489 209 8e-55
AT3G52880.2 | chr3:19601477-19604366 REVERSE LENGTH=467 168 2e-42
AT3G09940.1 | chr3:3056501-3059103 REVERSE LENGTH=442 167 3e-42
AT5G03630.1 | chr5:922378-924616 REVERSE LENGTH=436 162 1e-40
AT1G63940.2 | chr1:23730095-23733534 FORWARD LENGTH=494 120 5e-28
>AT3G27820.1 | chr3:10315249-10317881 FORWARD LENGTH=489
Length = 488
Score = 209 bits (533), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 106/186 (56%), Positives = 130/186 (69%), Gaps = 10/186 (5%)
Query: 3 LPADMVVVGVGARANTGLFDGQLVMENGGIKVNGRMQASDASVYAVGDVAAFPVKLFGGD 62
LPAD+VVVG+G R NT LF+GQL +E GGIKVN RMQ+SD+SVYA+GDVA FPVKLF G+
Sbjct: 249 LPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKLF-GE 307
Query: 63 VRRLEHVDCARRTARHAVAAMLEGTGSVGHIDYLPFFYSRVFSLSWQFYGDNAGEAVHFX 122
+RRLEHVD AR++ARHAV+A+++ + G DYLPFFYSRVF+ SWQFYGD G+ VHF
Sbjct: 308 MRRLEHVDSARKSARHAVSAIMDPIKT-GDFDYLPFFYSRVFAFSWQFYGDPTGDVVHF- 365
Query: 123 XXXXXXXXXXXXXKFGAYWVRDGRVAGAFLEGGSRQEYEXXXXXXXXXXXXXX-XXELER 181
FGAYWV+ G + G+FLEGG+++EYE ELER
Sbjct: 366 ------GEYEDGKSFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEELER 419
Query: 182 RGLAFA 187
GL FA
Sbjct: 420 EGLGFA 425
>AT3G52880.2 | chr3:19601477-19604366 REVERSE LENGTH=467
Length = 466
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/191 (47%), Positives = 119/191 (62%), Gaps = 7/191 (3%)
Query: 1 RRLPADMVVVGVGARANTGLFDGQLVMENGGIKVNGRMQASDASVYAVGDVAAFPVKLFG 60
R L AD+V+VGVGA+ T LF GQ+ + GGIK + + S VYAVGDVA FP+K++
Sbjct: 280 RTLEADIVIVGVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMY- 338
Query: 61 GDVRRLEHVDCARRTARHAVAAM--LEGTGSVGHIDYLPFFYSRVFSLSWQFYGDNAGEA 118
GDVRR+EHVD +R++A AV A+ EG +V DYLPFFYSR F LSWQFYGDN G++
Sbjct: 339 GDVRRVEHVDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLSWQFYGDNVGDS 398
Query: 119 VHFXXXXXXXXXXXXXXKFGAYWVRDGRVAGAFLEGGSRQEYEXXXXXXXXXXXXXXXXE 178
V F +FGAYWV+ G+V GAF+EGGS E + E
Sbjct: 399 VLF----GDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARPSAESLDE 454
Query: 179 LERRGLAFATQ 189
L ++G++FA +
Sbjct: 455 LVKQGISFAAK 465
>AT3G09940.1 | chr3:3056501-3059103 REVERSE LENGTH=442
Length = 441
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 RRLPADMVVVGVGARANTGLFDGQLVMENGGIKVNGRMQASDASVYAVGDVAAFPVKLFG 60
R L A++VV GVGAR T LF GQL E GGIK +G + S VYA+GDVA FP+K++G
Sbjct: 250 RTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKMYG 309
Query: 61 GDVRRLEHVDCARRTARHAVAAMLEGT--GSVGHIDYLPFFYSRVFSLSWQFYGDNAGEA 118
G RR+EH D AR++A AV A+ G ++ DYLP+FYSR F LSW+FYG+N GE+
Sbjct: 310 G-TRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFFKLSWEFYGENVGES 368
Query: 119 VHFXXXXXXXXXXXXXXKFGAYWVRDGRVAGAFLEGGSRQEYEXXXXXXXXXXXXXXXXE 178
V F KFG YWV+DG+V G FLEGG+++E++
Sbjct: 369 VLF----GDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVESLDV 424
Query: 179 LERRGLAFATQ 189
L GL+FAT+
Sbjct: 425 LSEEGLSFATK 435
>AT5G03630.1 | chr5:922378-924616 REVERSE LENGTH=436
Length = 435
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/191 (45%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 RRLPADMVVVGVGARANTGLFDGQLVMENGGIKVNGRMQASDASVYAVGDVAAFPVKLFG 60
R L AD+V+VGVG R LF Q+ E GG+K +G + S VYA+GDVA FP+KL+
Sbjct: 249 RTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLY- 307
Query: 61 GDVRRLEHVDCARRTARHAVAAM--LEGTGSVGHIDYLPFFYSRVFSLSWQFYGDNAGEA 118
++RR+EHVD AR++A AV A+ E S+ DYLP+FYSR F LSWQFYGDN GE+
Sbjct: 308 NEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLSWQFYGDNVGES 367
Query: 119 VHFXXXXXXXXXXXXXXKFGAYWVRDGRVAGAFLEGGSRQEYEXXXXXXXXXXXXXXXXE 178
V F KFG+YW+++ +V GAFLEGGS +E
Sbjct: 368 VLF----GDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEV 423
Query: 179 LERRGLAFATQ 189
L + GL+FAT
Sbjct: 424 LSKEGLSFATN 434
>AT1G63940.2 | chr1:23730095-23733534 FORWARD LENGTH=494
Length = 493
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 96/168 (57%), Gaps = 22/168 (13%)
Query: 3 LPADMVVVGVGARANTGLFDGQLVMEN--GGIKVNGRMQASDASVYAVGDVAAFPVKLFG 60
+ AD VV+G+GA+ G F+ L M GGI+V+G + S ++A+GDVAAFP+K++
Sbjct: 303 IEADTVVIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIY- 360
Query: 61 GDVRRLEHVDCARRTARHAVAAMLEGTGSVGHIDYLPFFYSRVFSLS-------WQFYGD 113
+ R+EHVD ARR+A+H V ++L T DYLP+FYSRVF WQF+GD
Sbjct: 361 DRMTRVEHVDHARRSAQHCVKSLL--TAHTDTYDYLPYFYSRVFEYEGSPRKVWWQFFGD 418
Query: 114 NAGEAVHFXXXXXXXXXXXXXXKFGAYWVRDGRVAGAFLEGGSRQEYE 161
N GE V K +W+ GR+ G +E GS +E++
Sbjct: 419 NVGETVEV---------GNFDPKIATFWIESGRLKGVLVESGSPEEFQ 457
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.140 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,087,472
Number of extensions: 138422
Number of successful extensions: 235
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 5
Length of query: 232
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 137
Effective length of database: 8,502,049
Effective search space: 1164780713
Effective search space used: 1164780713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)