BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0705400 Os02g0705400|AK070986
(184 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G21620.2 | chr2:9248749-9249986 FORWARD LENGTH=194 221 2e-58
AT3G58450.1 | chr3:21622032-21623057 FORWARD LENGTH=205 60 6e-10
AT3G17020.1 | chr3:5802728-5804063 REVERSE LENGTH=164 53 1e-07
AT1G68300.1 | chr1:25598518-25599261 REVERSE LENGTH=161 53 1e-07
AT3G53990.1 | chr3:19989658-19991019 REVERSE LENGTH=161 52 1e-07
AT1G11360.1 | chr1:3822171-3822899 REVERSE LENGTH=243 52 2e-07
AT5G14680.1 | chr5:4731620-4733025 REVERSE LENGTH=176 51 3e-07
AT3G62550.1 | chr3:23136194-23137074 FORWARD LENGTH=163 49 1e-06
>AT2G21620.2 | chr2:9248749-9249986 FORWARD LENGTH=194
Length = 193
Score = 221 bits (562), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 104/140 (74%), Positives = 124/140 (88%), Gaps = 6/140 (4%)
Query: 51 VAVDFGPNSKHAFDWALVHFARMADTLHLVHAVSS------VNNDLVYEKSQELMEDLAI 104
VAVD GPNSKHAFDWALVHF R+ADTLHLVHAVSS V ND+VYE SQ LME LA+
Sbjct: 44 VAVDHGPNSKHAFDWALVHFCRLADTLHLVHAVSSSFSLQCVKNDVVYETSQALMEKLAV 103
Query: 105 EALKTSLVRTKARIVEGDAGKVICREAERLKPAAVILGTRGRGLIQSVLQGSVSEYCFHN 164
EA + ++V++ AR+VEGDAGKVIC+EAE++KPAAVI+GTRGR L++SVLQGSVSEYCFHN
Sbjct: 104 EAYQVAMVKSVARVVEGDAGKVICKEAEKVKPAAVIVGTRGRSLVRSVLQGSVSEYCFHN 163
Query: 165 CKAAPVIIVPGKEAGEQSVL 184
CK+APVIIVPGKEAG++S++
Sbjct: 164 CKSAPVIIVPGKEAGDESIV 183
>AT3G58450.1 | chr3:21622032-21623057 FORWARD LENGTH=205
Length = 204
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 32/160 (20%)
Query: 51 VAVDFGPNSKHAFDWALVHF-------------ARMADTLHL-----------------V 80
VA+D NS A +WA+ H + LH+ V
Sbjct: 34 VAIDESKNSFDALEWAVDHLRVVISAEPETGQEGGLLTLLHVHPTYLQYIYPSGGTASAV 93
Query: 81 HAVSSVNNDL--VYEKSQELMEDLAIEALKTSLVRTKARIVEGDAGKVICREAERLKPAA 138
+A SV + E+S + A+E + +V+T+ I+EGD ++IC+ E+
Sbjct: 94 YATDSVPEPMRKAREESTTNLFTRALEICRGKMVKTETMILEGDPKEMICQAVEQTHVDL 153
Query: 139 VILGTRGRGLIQSVLQGSVSEYCFHNCKAAPVIIVPGKEA 178
+++G+RG G+I+ GSVS+YC + K +I+ P +E
Sbjct: 154 LVVGSRGLGMIKRAFLGSVSDYCAQHAKCPILIVRPPRET 193
>AT3G17020.1 | chr3:5802728-5804063 REVERSE LENGTH=164
Length = 163
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 36/154 (23%)
Query: 51 VAVDFGPNSKHAFDWALVHFARMADTLHLVHAVSSVNNDLVYEKSQ-------------- 96
VAVDF SK A WA+ + R D L L+ ++ +D+ YE+ +
Sbjct: 11 VAVDFSDCSKKALSWAIDNVVRDGDHLILI----TIAHDMNYEEGEMQLWETVGSPFIPM 66
Query: 97 ------ELMEDLAI--EALKTSLVRTKAR---------IVEGDAGKVICREAERLKPAAV 139
+M+ A+ +A +V T AR I GD + IC AE++ +++
Sbjct: 67 SEFSDAAVMKKYALKPDAETLDIVNTAARKKTITVVMKIYWGDPREKICAAAEQIPLSSL 126
Query: 140 ILGTRGRGLIQSVLQGSVSEYCFHNCKAAPVIIV 173
++G RG G ++ ++ GSVS + +N A PV +V
Sbjct: 127 VMGNRGLGGLKRMIMGSVSNHVVNNV-ACPVTVV 159
>AT1G68300.1 | chr1:25598518-25599261 REVERSE LENGTH=161
Length = 160
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 22/147 (14%)
Query: 51 VAVDFGPNSKHAFDWALVHFA-RMADT-LHLVHAVSSVNNDLVYEKSQ-----ELMEDLA 103
VA+D SK A W LV+ +AD+ + L A ++ VY S EL+ L
Sbjct: 14 VAIDESECSKRALQWTLVYLKDSLADSDIILFTAQPHLDLSCVYASSYGAAPIELINSLQ 73
Query: 104 IEALKTSLVR-------------TKARIVE-GDAGKVICREAERLKPAAVILGTRGRGLI 149
L R T +++E G+ + IC AE+L +++G+ G+G +
Sbjct: 74 ESHKNAGLNRLDEGTKICAETGVTPRKVLEFGNPKEAICEAAEKLGVDMLVVGSHGKGAL 133
Query: 150 QSVLQGSVSEYCFHNCKAAPVIIVPGK 176
Q GSVS YC +N K PV++V K
Sbjct: 134 QRTFLGSVSNYCVNNAK-CPVLVVRTK 159
>AT3G53990.1 | chr3:19989658-19991019 REVERSE LENGTH=161
Length = 160
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 27/153 (17%)
Query: 51 VAVDFGPNSKHAFDWALVHFARMADTLHLVHAV----SSVNNDLVYE-----------KS 95
+A+DF +SK+A WA+ + A DT++++H + N L ++ +
Sbjct: 9 IAMDFSESSKNALKWAIENLADKGDTIYIIHTLPLSGDESRNSLWFKSGSPLIPLAEFRE 68
Query: 96 QELME------DLA-IEALKTSLVRTKARIVE----GDAGKVICREAERLKPAAVILGTR 144
E+ME D+A ++ L T + + +V GDA + + + LK ++++G+R
Sbjct: 69 PEIMEKYGVKTDIACLDMLDTGSRQKEVHVVTKLYWGDAREKLVDAVKDLKLDSIVMGSR 128
Query: 145 GRGLIQSVLQGSVSEYCFHNCKAAPVIIVPGKE 177
G +Q ++ GSVS + + PV +V E
Sbjct: 129 GLSALQRIIMGSVSSFVIQHA-PCPVTVVKDNE 160
>AT1G11360.1 | chr1:3822171-3822899 REVERSE LENGTH=243
Length = 242
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 32/161 (19%)
Query: 51 VAVDFGPNSKHAFDWALVHFARMADTLHLVHAVS--------------SVNNDLVYEKSQ 96
+AVD S +A WA+ ++ R D + L+H S D E+SQ
Sbjct: 42 IAVDLSDESAYAVQWAVQNYLRSGDAVVLLHVQPTSVLYGADWGAMDLSPQWDPNNEESQ 101
Query: 97 ELMED-----------LAIEALKTSLVRTKARIVEG-DAGKVICREAERLKPAAVILGTR 144
+ED + L + + K IV+ D + +C E ERL + +I+G+R
Sbjct: 102 RKLEDDFDIVTNKKASDVAQPLVEADIPFKIHIVKDHDMKERLCLEVERLGLSTLIMGSR 161
Query: 145 GRGLIQSVLQ---GSVSEYCFHNCKAAPVIIV--PGKEAGE 180
G G + + GSVS+Y H+C A PV++V P + GE
Sbjct: 162 GFGATKRSSKGRLGSVSDYSVHHC-ACPVVVVRFPDDKDGE 201
>AT5G14680.1 | chr5:4731620-4733025 REVERSE LENGTH=176
Length = 175
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 112 VRTKARIVEGDAGKVICREAERLKPAAVILGTRGRGLIQSVLQGSVSEYCFHNCKAAPVI 171
V +A I +GD ++IC E R++P +++G+RG G Q V G+VSE+C + + PVI
Sbjct: 101 VGCEAWIRKGDPTELICHEVRRVRPDFLVVGSRGLGPFQKVFVGTVSEFCVKHAE-CPVI 159
Query: 172 IVPGKEAGEQS 182
+ K E+S
Sbjct: 160 TI--KRTAEES 168
>AT3G62550.1 | chr3:23136194-23137074 FORWARD LENGTH=163
Length = 162
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 110 SLVRTKARIVEGDAGKVICREAERLKPAAVILGTRGRGLIQSVLQGSVSEYCFHNCKAAP 169
S + + R+ GDA +VIC ++L+ +++GT G + L GSVSEYC K P
Sbjct: 93 SDINIERRVGRGDAKEVICNAVQKLRVDMLVMGTHDYGFFKRALLGSVSEYCAKRVK-CP 151
Query: 170 VIIV 173
V+IV
Sbjct: 152 VVIV 155
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,852,843
Number of extensions: 92356
Number of successful extensions: 323
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 8
Length of query: 184
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 92
Effective length of database: 8,584,297
Effective search space: 789755324
Effective search space used: 789755324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)