BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0702800 Os02g0702800|AK071767
(267 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46860.1 | chr5:19012342-19013795 REVERSE LENGTH=269 177 4e-45
AT4G17730.2 | chr4:9865351-9866717 FORWARD LENGTH=263 169 1e-42
AT5G16830.1 | chr5:5533076-5535152 REVERSE LENGTH=280 157 7e-39
AT1G32270.1 | chr1:11642593-11644962 FORWARD LENGTH=417 94 7e-20
>AT5G46860.1 | chr5:19012342-19013795 REVERSE LENGTH=269
Length = 268
Score = 177 bits (450), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 131/220 (59%), Gaps = 6/220 (2%)
Query: 27 VFQITTAVASYRRLLNSLGTPKDTPALRDQLQKTSHNILQLAKDAKEKLRRAAEADKNAD 86
+FQI T V++++RL+N+LGTPKDTP LR++L KT +I QL KD KL+ A+E D +
Sbjct: 32 IFQINTGVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKEASETDHQSG 91
Query: 87 TSADKRVADMKLAKDFATTMEEYGKLQNLAIQREMAYKPVVPQTSQP-NYTTGGIEARDS 145
+ K++AD KLA+DF ++E+ K Q A +RE Y P VPQ++ P +YT G ++
Sbjct: 92 VNPSKKIADAKLARDFQAVLKEFQKAQQTAAERETTYTPFVPQSALPSSYTAGEVD---- 147
Query: 146 GKIPEQHALLAESKRQEVLQLDNEIVFNXXXXXXXXXXXXXXXXXXXXVHEAFKDLATLV 205
K+PEQ A L ESKRQE++ LDNEI FN V+E FKDLA LV
Sbjct: 148 -KVPEQRAQLQESKRQELVLLDNEIAFNEAVIEEREQGIQEIHQQIGEVNEIFKDLAVLV 206
Query: 206 HIQGVTIEEIDTNIENXXXXXXXXXXXXXXXXXXQKSNSS 245
+ QGV I++I T+I+N QKSNSS
Sbjct: 207 NDQGVMIDDIGTHIDNSRAATSQGKSQLVQAAKTQKSNSS 246
>AT4G17730.2 | chr4:9865351-9866717 FORWARD LENGTH=263
Length = 262
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 122/196 (62%), Gaps = 2/196 (1%)
Query: 27 VFQITTAVASYRRLLNSLGTPKDTPALRDQLQKTSHNILQLAKDAKEKLRRAAEADKNAD 86
+FQI T+V+++ RL+N+LGTPKDTP LR++L KT I QL KD KL+ A+E D
Sbjct: 37 IFQINTSVSTFHRLVNTLGTPKDTPELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRG 96
Query: 87 TSADKRVADMKLAKDFATTMEEYGKLQNLAIQREMAYKPVVPQTSQP-NYTTGGIEARDS 145
+ K++ D KLAKDF ++E+ K Q LA +RE Y P+V + S P +YT+ I+ +
Sbjct: 97 VNQKKKIVDAKLAKDFQAVLKEFQKAQRLAAERETVYAPLVHKPSLPSSYTSSEIDV-NG 155
Query: 146 GKIPEQHALLAESKRQEVLQLDNEIVFNXXXXXXXXXXXXXXXXXXXXVHEAFKDLATLV 205
K PEQ ALL ESKRQE++ LDNEI FN VHE FKDLA LV
Sbjct: 156 DKHPEQRALLVESKRQELVLLDNEIAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLV 215
Query: 206 HIQGVTIEEIDTNIEN 221
H QG I++I T+I+N
Sbjct: 216 HDQGNMIDDIGTHIDN 231
>AT5G16830.1 | chr5:5533076-5535152 REVERSE LENGTH=280
Length = 279
Score = 157 bits (396), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 129/219 (58%), Gaps = 1/219 (0%)
Query: 27 VFQITTAVASYRRLLNSLGTPKDTPALRDQLQKTSHNILQLAKDAKEKLRRAAEADKNAD 86
+F+I+TAV S+ RL+NS+GTPKDT LRD+LQKT I +L K+ KL+ A+EAD +
Sbjct: 40 IFRISTAVNSFFRLVNSIGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGS 99
Query: 87 TSADKRVADMKLAKDFATTMEEYGKLQNLAIQREMAYKPVVPQTSQPNYTTGGIEARDSG 146
S K++AD KLAKDF + ++E+ K Q LA +RE+ Y PVV + +Y ++ +S
Sbjct: 100 ASQIKKIADAKLAKDFQSVLKEFQKAQRLAAEREITYTPVVTKEIPTSYNAPELDT-ESL 158
Query: 147 KIPEQHALLAESKRQEVLQLDNEIVFNXXXXXXXXXXXXXXXXXXXXVHEAFKDLATLVH 206
+I +Q ALL +S+RQEV+ LDNEI FN V+ FKDLA +V+
Sbjct: 159 RISQQQALLLQSRRQEVVFLDNEITFNEAIIEEREQGIREIEDQIRDVNGMFKDLALMVN 218
Query: 207 IQGVTIEEIDTNIENXXXXXXXXXXXXXXXXXXQKSNSS 245
QG +++I +N++N Q+SNSS
Sbjct: 219 HQGNIVDDISSNLDNSHAATTQATVQLRKAAKTQRSNSS 257
>AT1G32270.1 | chr1:11642593-11644962 FORWARD LENGTH=417
Length = 416
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 6/158 (3%)
Query: 64 ILQLAKDAKEKLRRAAEADKNADTSADKRVADMKLAKDFATTMEEYGKLQNLAIQREMAY 123
I QL KD LR A+E D D + K++AD KLAKDF ++E+ K Q++ ++RE +Y
Sbjct: 160 IGQLVKDTSANLREASETDHRRDVAQSKKIADAKLAKDFEAALKEFQKAQHITVERETSY 219
Query: 124 KPVVPQTSQPNYTTGGIEARDSGKIPEQHALLAESKRQEVLQLDNEIVFNXXXXXXXXXX 183
P P+ S +++ ++ + EQ L+ ES+RQE++ LDNEI N
Sbjct: 220 IPFDPKGS---FSSSEVDI-GYDRSQEQRVLM-ESRRQEIVLLDNEISLNEARIEAREQG 274
Query: 184 XXXXXXXXXXVHEAFKDLATLVHIQGVTIEEIDTNIEN 221
V E FKDLA +V QG TI++ID I+N
Sbjct: 275 IQEVKHQISEVMEMFKDLAVMVDHQG-TIDDIDEKIDN 311
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.126 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,474,381
Number of extensions: 115947
Number of successful extensions: 376
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 4
Length of query: 267
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 170
Effective length of database: 8,447,217
Effective search space: 1436026890
Effective search space used: 1436026890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)