BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0697700 Os02g0697700|AK120209
         (156 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35585.1  | chr2:14936889-14937873 FORWARD LENGTH=157          147   2e-36
AT1G31940.1  | chr1:11470293-11471154 REVERSE LENGTH=159          145   8e-36

>AT2G35585.1 | chr2:14936889-14937873 FORWARD LENGTH=157
          Length = 156

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/158 (49%), Positives = 108/158 (68%), Gaps = 8/158 (5%)

Query: 1   MVGIFSRFSA--GAHRRAKSAVEVVETLAPNMNSGEPDSQAVPADSPHGIEVGVEFKPVE 58
           MVGIFSRFS   G+HRR +SA++  E L+P   S    +        HGIEV  EFKPV+
Sbjct: 1   MVGIFSRFSVVRGSHRRTQSAIDGREVLSPR--SDLAPATNTTTTETHGIEVATEFKPVD 58

Query: 59  HPVEPVNLDQPVKCPLPEPSILHDGRIWKERIATAGVRVMTDLPVVKEGSQLESDSSG-- 116
           HP+EP++ DQP++CPLPEPSIL+DGR+WKER++ + +R  +DL +V++G   ESD S   
Sbjct: 59  HPMEPLDNDQPIQCPLPEPSILNDGRLWKERVSASSMRRRSDLAIVQDGMDEESDVSVTS 118

Query: 117 --ARSRSAVPKRAILPSVSAPENNILALLDECDVPESL 152
             +R+      R ILPS+SAPE+++L LL+EC V  S+
Sbjct: 119 IPSRTSQCNTNRPILPSLSAPEHDLLNLLEECKVSGSI 156



>AT1G31940.1 | chr1:11470293-11471154 REVERSE LENGTH=159
          Length = 158

 Score =  145 bits (366), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 82/150 (54%), Positives = 105/150 (70%), Gaps = 5/150 (3%)

Query: 1   MVGIFSRFSAG--AHRRAKSAVEVVETLAPNMNSGEPDSQAVPADSPHGIEVGVEFKPVE 58
           MVGIFSRFS G   HRR +SA++  E LAPN +     +      + HGIEV  EFKPVE
Sbjct: 1   MVGIFSRFSVGRSTHRRTQSAIDDKEVLAPNSDVIAATTTTATTAT-HGIEVATEFKPVE 59

Query: 59  HPVEPVNLDQPVKCPLPEPSILHDGRIWKERIATAGVRVMTDLPVVKEGSQLESDSSG-A 117
           HPVEP++ D P++CPLPEPSIL+DGRIWKER+ +A +R   DL +VK+ +  ESD S   
Sbjct: 60  HPVEPLDNDLPIQCPLPEPSILNDGRIWKERV-SASMRRKGDLQIVKDEAASESDGSAPK 118

Query: 118 RSRSAVPKRAILPSVSAPENNILALLDECD 147
             R   P R+ILPS+SAPE+N+L LL+EC+
Sbjct: 119 PPRPPQPNRSILPSLSAPEHNLLNLLEECN 148



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,493,546
Number of extensions: 148407
Number of successful extensions: 330
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 2
Length of query: 156
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 66
Effective length of database: 8,639,129
Effective search space: 570182514
Effective search space used: 570182514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 107 (45.8 bits)