BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0694700 Os02g0694700|AK106892
         (415 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32340.1  | chr1:11663462-11666037 REVERSE LENGTH=689          258   3e-69

>AT1G32340.1 | chr1:11663462-11666037 REVERSE LENGTH=689
          Length = 688

 Score =  258 bits (660), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 125/293 (42%), Positives = 181/293 (61%), Gaps = 13/293 (4%)

Query: 37  AEDELSEEQIQANNQTQEDELLALQAIYGDDLVIFDNKDGLRFFQISLHYQLAGD--IRV 94
           +E EL+EEQ++ N+Q QEDELLAL  IYG ++ IFD  + +R+FQ+ ++ +   +  I  
Sbjct: 173 SEPELTEEQLKMNDQLQEDELLALGYIYGGNMFIFDRYNDMRYFQVHVNVEATSEYTIST 232

Query: 95  YLNVCPNGRTETGAENXXXXXXXRLLYACSLQHLPPVVLACLLPRLYPSHRAPYFVVAAK 154
            LN+  +   E+             LY+   QHLPP+VL CLLP+ YPSH  PYF+++ +
Sbjct: 233 KLNLQADSSKES----------EDFLYSFKAQHLPPIVLKCLLPKAYPSHLPPYFLISVQ 282

Query: 155 WLDEPEVSSFCSVLDEIWAEQPAGQEVVYKWVDWLSTSSWFCIASDDQIVFGPDADSAGG 214
           W++  ++SS CS LD +W+EQP GQEV+Y+W DWL  SS   +  D++IV GP   +   
Sbjct: 283 WMNPDKISSLCSKLDSLWSEQP-GQEVLYQWTDWLQNSSISHLGFDNEIVLGPYGVTCSR 341

Query: 215 DDRAIGRSCSLDSMIPLIQRYSKERSHEIFARRIHECGVCLSENTGRNFIQLPCSHSFCV 274
           D RA+  S S DS IP I+ Y  E+ H+ F + +HEC +C SE+ G +F++LPC H FC+
Sbjct: 342 DKRAVSGSRSPDSDIPYIRSYDDEKRHDSFLQSLHECCICFSESAGIDFVKLPCQHFFCL 401

Query: 275 KCMETQCRIHVKEGSVARLTCPDTSCXXXXXXXXXXXXXXXXEYARWESLVLR 327
           KCM+T   IHV EG+V +L CPD+ C                 Y RWE+L+L+
Sbjct: 402 KCMKTYTDIHVTEGTVNKLKCPDSKCGETVPPGILKRLLGDEAYERWETLMLQ 454



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.134    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,631,027
Number of extensions: 308614
Number of successful extensions: 882
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 885
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 314
Effective length of database: 8,337,553
Effective search space: 2617991642
Effective search space used: 2617991642
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)