BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0688500 Os02g0688500|AK102212
         (515 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44660.1  | chr2:18420832-18422827 REVERSE LENGTH=507          511   e-145

>AT2G44660.1 | chr2:18420832-18422827 REVERSE LENGTH=507
          Length = 506

 Score =  511 bits (1316), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 263/494 (53%), Positives = 334/494 (67%), Gaps = 10/494 (2%)

Query: 20  VKLLLVPTYRSTDFDVHRYWLALTHALPARRWYTDASSQWTLDYPPFFAYFSRLLALPAP 79
           VKLLL+P+ RSTDF+VHR WLA+T++LP  +WY D +SQWTLDYPPFFAYF R L++ A 
Sbjct: 22  VKLLLIPSSRSTDFEVHRNWLAITNSLPLTKWYFDETSQWTLDYPPFFAYFERFLSIFAR 81

Query: 80  LVDASLVSLPVPDAPPSFAYLLYLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 139
           LVD  +V L       + + + + R                                   
Sbjct: 82  LVDPRIVDLQSGLDYNAESVIYFQRISVIVSDLCLLYGVYRLTRKLEPLKRNLICAL--- 138

Query: 140 XVLWSPALLAVDHVHFQYNGFXXXXXXXXXXXXEQGRDLAGGVVFAALLCSKHLFLVAAP 199
            V+WSP LL VDH+HFQYNGF            ++GRDL GG +FA LLC KHLF V AP
Sbjct: 139 -VIWSPGLLIVDHIHFQYNGFLLGWLLLSISFLQEGRDLLGGFLFAVLLCFKHLFAVTAP 197

Query: 200 VYFVYLFRHYCCXXXXXXXXXXXXXXXXXXXXXXXXXXXPFLYYGQMQQLFNRLFPFGRG 259
           VYFVYL RHYC                            PF+Y+GQ+QQ+ +R+FPFGRG
Sbjct: 198 VYFVYLLRHYC-WSGLVTGFRRLVTIGAVVVAVFAAAYGPFIYHGQIQQVISRMFPFGRG 256

Query: 260 LCHAYWAPNFWVFYILLDKIFAFLLRRLGFNIQIPEASFTGGLVGNSSPFAVLPKVTPIT 319
           LCHAYWAPNFWVFYI+LDK  A LLR+LG+ IQIP ASFTGGLVG+SSPFAVLP++TP+T
Sbjct: 257 LCHAYWAPNFWVFYIILDKGLAVLLRKLGYEIQIPSASFTGGLVGDSSPFAVLPQITPLT 316

Query: 320 TFLLVILAMSPCLMKAFSKPQPRHIIRWVSYATTCGFMFGWHVHEKASLHFTIPLALIAM 379
           TF +V+LA+SPCL+KA+ KP    + RWV+YA TCGF+FGWHVHEKASLHFTIPLA++A+
Sbjct: 317 TFAMVLLAISPCLIKAWKKPHSGLVARWVAYAYTCGFLFGWHVHEKASLHFTIPLAIVAV 376

Query: 380 DSLEDAKHYFVLSIVSCYSLFPLLFENQEYPIKVMLLLTYATLMWVGFSSHFAAKSPQEG 439
            SLEDAKHYF++SIVSCYSL+PLL+E QEYPIKV+LLL ++ +MW+GF++ +     Q+ 
Sbjct: 377 QSLEDAKHYFLVSIVSCYSLYPLLYEPQEYPIKVLLLLLHSVVMWLGFAAQYTDYKAQK- 435

Query: 440 KKVNESGSVVRKNSFIGWISFSYLLGIVAIELWSQVFHHYVFGSRFPFLPLIMVSLYCGV 499
           K+ +E  S  R    IG    SYL+G++ +E+ SQ  H Y  G + PFLPL+++S YC V
Sbjct: 436 KETSEIKSKFR----IGCFEKSYLMGLIIVEIVSQFLHPYFLGDKLPFLPLMLISTYCTV 491

Query: 500 GMMYSWMWQLAWIV 513
           G+MYSW+WQL  I+
Sbjct: 492 GIMYSWIWQLRKIL 505



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.331    0.143    0.485 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,832,324
Number of extensions: 383615
Number of successful extensions: 944
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 944
Number of HSP's successfully gapped: 2
Length of query: 515
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 412
Effective length of database: 8,282,721
Effective search space: 3412481052
Effective search space used: 3412481052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 114 (48.5 bits)