BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0687200 Os02g0687200|AK059947
(106 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178 70 2e-13
AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160 67 1e-12
AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94 65 6e-12
AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163 54 2e-08
AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114 53 4e-08
AT4G39795.1 | chr4:18466621-18467325 FORWARD LENGTH=127 50 2e-07
AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148 50 3e-07
AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151 48 1e-06
AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127 48 1e-06
AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127 48 1e-06
>AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178
Length = 177
Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 36/46 (78%)
Query: 27 HAMDACSLCRKPLTRNCDIFMYRGNTPFCSEECRDHQMEMDEAAVR 72
H +D+C LC+KPL N DI+MYRG+TPFCSEECR Q+E DEA +
Sbjct: 96 HFLDSCFLCKKPLGDNRDIYMYRGDTPFCSEECRQEQIERDEAKEK 141
>AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160
Length = 159
Score = 67.4 bits (163), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 36/46 (78%)
Query: 27 HAMDACSLCRKPLTRNCDIFMYRGNTPFCSEECRDHQMEMDEAAVR 72
H +D+C LC+K L N DIFMYRG+TPFCSEECR+ Q+E DEA +
Sbjct: 75 HFLDSCFLCKKRLGDNRDIFMYRGDTPFCSEECREEQIERDEAKEK 120
>AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94
Length = 93
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 35/51 (68%)
Query: 22 ACLSGHAMDACSLCRKPLTRNCDIFMYRGNTPFCSEECRDHQMEMDEAAVR 72
C H +++CSLCRK L N DIFMYRG+ FCS ECR+ Q+E DEA R
Sbjct: 10 GCEEPHFLESCSLCRKHLGLNSDIFMYRGDKAFCSNECREEQIESDEAKER 60
>AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163
Length = 162
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 20 GEACLSGHAMDACSLCRKPLTRNCDIFMYRGNTPFCSEECRDHQMEMDE 68
G+ +GH + +C+LC + L DI+MYRG+ FCS ECR QM DE
Sbjct: 81 GDFSDAGHFLRSCALCERLLVPGRDIYMYRGDKAFCSSECRQEQMAQDE 129
>AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114
Length = 113
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 29 MDACSLCRKPLTRNCDIFMYRGNTPFCSEECRDHQMEMDEAAVRV 73
+ CSLC + L + DI+MYRGN FCS ECR+ Q+++DE +
Sbjct: 58 LKTCSLCNRSLCHHRDIYMYRGNNAFCSLECREKQIKLDEKKAKT 102
>AT4G39795.1 | chr4:18466621-18467325 FORWARD LENGTH=127
Length = 126
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 19 GGEACLSGHAMDACSLCRKPLTRNCDIFMYRGNTPFCSEECRDHQMEMDEAAVR 72
GG + S ++ C C++ L DI+MY+G+ FCS ECR+ QME DE R
Sbjct: 65 GGRSSPSSFLVN-CGFCKRGLAPGRDIYMYKGDAAFCSIECREQQMEHDEGKTR 117
>AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148
Length = 147
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 29 MDACSLCRKPLTRNCDIFMYRGNTPFCSEECRDHQMEMDE 68
+ +CSLC++ L DI+MYRG+ FCS ECR Q+ +DE
Sbjct: 79 LRSCSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQITVDE 118
>AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151
Length = 150
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 29 MDACSLCRKPLTRNCDIFMYRGNTPFCSEECRDHQMEMDE 68
++ C LCR+ L DI+MY+G+ FCS ECR QM MDE
Sbjct: 69 LEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQMIMDE 108
>AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127
Length = 126
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 29 MDACSLCRKPLTRNCDIFMYRGNTPFCSEECRDHQMEMDE 68
+ C LC K L ++ D++MYRG+ FCS ECR+ QM +D+
Sbjct: 43 LKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLIDD 82
>AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127
Length = 126
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 29 MDACSLCRKPLTRNCDIFMYRGNTPFCSEECRDHQMEMDE 68
+ C LC K L ++ D++MYRG+ FCS ECR+ QM +D+
Sbjct: 43 LKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLIDD 82
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,974,790
Number of extensions: 65025
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 11
Length of query: 106
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 31
Effective length of database: 9,050,369
Effective search space: 280561439
Effective search space used: 280561439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)