BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0686700 Os02g0686700|AK111294
(92 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160 80 2e-16
AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178 75 5e-15
AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94 65 6e-12
AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163 59 7e-10
AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151 55 1e-08
AT4G39795.1 | chr4:18466621-18467325 FORWARD LENGTH=127 53 3e-08
AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127 52 6e-08
AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127 52 6e-08
AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148 52 6e-08
AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249 51 1e-07
AT1G74940.1 | chr1:28146284-28147065 FORWARD LENGTH=223 50 2e-07
AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114 50 3e-07
AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264 49 7e-07
AT1G19200.1 | chr1:6625104-6625856 REVERSE LENGTH=216 47 1e-06
AT3G22550.1 | chr3:7991827-7992805 REVERSE LENGTH=268 46 4e-06
AT2G25690.1 | chr2:10940530-10941649 REVERSE LENGTH=325 46 4e-06
>AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160
Length = 159
Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 33/41 (80%), Positives = 36/41 (87%)
Query: 5 GHTHFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
G HFLD+CFLC+KRL NRDIFMYRGDTPFCSEECR EQ+
Sbjct: 72 GQPHFLDSCFLCKKRLGDNRDIFMYRGDTPFCSEECREEQI 112
>AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178
Length = 177
Score = 75.5 bits (184), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 35/38 (92%)
Query: 8 HFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
HFLD+CFLC+K L NRDI+MYRGDTPFCSEECR+EQ+
Sbjct: 96 HFLDSCFLCKKPLGDNRDIYMYRGDTPFCSEECRQEQI 133
>AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94
Length = 93
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 8 HFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQMXXXXXXXXXXXXXXXGKLTRGA 67
HFL++C LCRK L N DIFMYRGD FCS ECR EQ+ K + +
Sbjct: 15 HFLESCSLCRKHLGLNSDIFMYRGDKAFCSNECREEQIESDEAKER--------KWKKSS 66
Query: 68 PSSRREVEGPQER--GNSVRAGSILA 91
S R+ +E GN+VR G+++
Sbjct: 67 RSLRKNSSETKESAAGNTVRTGTLVV 92
>AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163
Length = 162
Score = 58.5 bits (140), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 28/38 (73%)
Query: 8 HFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
HFL +C LC + L RDI+MYRGD FCS ECR+EQM
Sbjct: 88 HFLRSCALCERLLVPGRDIYMYRGDKAFCSSECRQEQM 125
>AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151
Length = 150
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 29/37 (78%)
Query: 9 FLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
FL+ CFLCR++L +DI+MY+GD FCS ECR +QM
Sbjct: 68 FLEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQM 104
>AT4G39795.1 | chr4:18466621-18467325 FORWARD LENGTH=127
Length = 126
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 2 GRGGHTHFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
GR + FL C C++ LA RDI+MY+GD FCS ECR +QM
Sbjct: 66 GRSSPSSFLVNCGFCKRGLAPGRDIYMYKGDAAFCSIECREQQM 109
>AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127
Length = 126
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 9 FLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
FL C LC K+L ++D++MYRGD FCS ECR QM
Sbjct: 42 FLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQM 78
>AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127
Length = 126
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 9 FLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
FL C LC K+L ++D++MYRGD FCS ECR QM
Sbjct: 42 FLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQM 78
>AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148
Length = 147
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 9 FLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
FL +C LC++ L RDI+MYRGD FCS ECR++Q+
Sbjct: 78 FLRSCSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQI 114
>AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249
Length = 248
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%), Gaps = 1/37 (2%)
Query: 9 FLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
FL++C+LCRK+L G +DIF+YRG+ FCS ECR +
Sbjct: 182 FLNSCYLCRKKLHG-QDIFIYRGEKAFCSTECRSSHI 217
>AT1G74940.1 | chr1:28146284-28147065 FORWARD LENGTH=223
Length = 222
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 5 GHTHFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
G T FL +C LC+K+L G +DI+MY+G+ FCS ECR Q+
Sbjct: 146 GPTEFLSSCCLCKKKLQG-KDIYMYKGEMGFCSAECRSVQI 185
>AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114
Length = 113
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 9 FLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
FL C LC + L +RDI+MYRG+ FCS ECR +Q+
Sbjct: 57 FLKTCSLCNRSLCHHRDIYMYRGNNAFCSLECREKQI 93
>AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264
Length = 263
Score = 48.5 bits (114), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 9 FLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
FL CF C+K L +DI++YRG+ FCS ECR ++M
Sbjct: 220 FLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEM 256
>AT1G19200.1 | chr1:6625104-6625856 REVERSE LENGTH=216
Length = 215
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%), Gaps = 1/33 (3%)
Query: 9 FLDACFLCRKRLAGNRDIFMYRGDTPFCSEECR 41
FL +C LC+K+L G +DI+MY+GD FCS+ECR
Sbjct: 150 FLTSCCLCKKKLQG-KDIYMYKGDEGFCSKECR 181
>AT3G22550.1 | chr3:7991827-7992805 REVERSE LENGTH=268
Length = 267
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 23/37 (62%)
Query: 9 FLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
FL C C+K L DIFMYRGD FCS ECR +M
Sbjct: 222 FLSCCCNCKKSLGPRDDIFMYRGDRAFCSSECRSIEM 258
>AT2G25690.1 | chr2:10940530-10941649 REVERSE LENGTH=325
Length = 324
Score = 45.8 bits (107), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 8 HFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
+FL C C K+L G DI+MYR + FCSEECR E+M
Sbjct: 266 NFLGICNFCNKKLGGGDDIYMYR-EKSFCSEECRSEEM 302
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.140 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,758,345
Number of extensions: 48566
Number of successful extensions: 103
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 16
Length of query: 92
Length of database: 11,106,569
Length adjustment: 63
Effective length of query: 29
Effective length of database: 9,379,361
Effective search space: 272001469
Effective search space used: 272001469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)