BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0683900 Os02g0683900|AK070614
(284 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G02180.1 | chr2:560976-562961 FORWARD LENGTH=304 348 2e-96
AT1G14530.1 | chr1:4971420-4973597 REVERSE LENGTH=294 320 4e-88
AT4G21790.1 | chr4:11569924-11572163 FORWARD LENGTH=292 300 5e-82
>AT2G02180.1 | chr2:560976-562961 FORWARD LENGTH=304
Length = 303
Score = 348 bits (893), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 166/262 (63%), Positives = 198/262 (75%)
Query: 18 VNGSTAWQDGIFLSLAALYGLVAASSFIQVVRIQYRVPEYGWTTQKVFQLLNFIVNGARC 77
VN S WQD IF LA LYG+V+ + IQ+VRIQ RVPEYGWTTQKVF LNF+VNG R
Sbjct: 39 VNESPIWQDRIFHVLAVLYGIVSLVAVIQLVRIQLRVPEYGWTTQKVFHFLNFVVNGVRA 98
Query: 78 SIFAVRRQVQQVNPEIFQHVILDLPGLAFFTTYAMLALFWAEISYQARGLETEGLRSGFY 137
+F RR VQ + PEI QH++LD+P LAFFTTYA+L LFWAEI YQAR + T+GLR F+
Sbjct: 99 VVFVFRRNVQFMQPEILQHILLDIPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPSFF 158
Query: 138 TINGVIYVIQVLLWALLWHNPNPSMIVLSKLFIAGLSFSAAXXXXXXXXXXXXXXKRFPI 197
TIN V+YV+Q+ LW +LW P M++LSK+F AG+S AA +RFP+
Sbjct: 159 TINAVVYVVQIALWLVLWWKPVRVMVILSKMFFAGVSLFAALGFLLYGGRLFLMLQRFPV 218
Query: 198 ESKGRQKKLREVGRVATICFLCFLARCIMMCFDAFDKKADLDVLDHPILNFIYYLIVEIL 257
ESKGR+KKL+EVG V TICF CFL RCIMMCF AFD+ A+LDVLDHPILNFIYYL+VEIL
Sbjct: 219 ESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFAAFDEGANLDVLDHPILNFIYYLLVEIL 278
Query: 258 PSSLVLFILRRIPSKLRLAQYH 279
PSSLVLFILR++P K + QYH
Sbjct: 279 PSSLVLFILRKLPPKRGITQYH 300
>AT1G14530.1 | chr1:4971420-4973597 REVERSE LENGTH=294
Length = 293
Score = 320 bits (821), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 167/265 (63%), Positives = 198/265 (74%)
Query: 18 VNGSTAWQDGIFLSLAALYGLVAASSFIQVVRIQYRVPEYGWTTQKVFQLLNFIVNGARC 77
VN S WQD IF LA LYG+V+ + IQ+VRIQ RVPEYGWTTQKVF LNF+VNG R
Sbjct: 29 VNESPVWQDRIFHVLAVLYGIVSVIAVIQLVRIQLRVPEYGWTTQKVFHFLNFMVNGVRA 88
Query: 78 SIFAVRRQVQQVNPEIFQHVILDLPGLAFFTTYAMLALFWAEISYQARGLETEGLRSGFY 137
+F RR Q + PEI QH++LD+P LAFFTTYA+L LFWAEI YQAR + T+GLR F+
Sbjct: 89 LVFLFRRDAQNMQPEILQHILLDIPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPSFF 148
Query: 138 TINGVIYVIQVLLWALLWHNPNPSMIVLSKLFIAGLSFSAAXXXXXXXXXXXXXXKRFPI 197
TIN V+YVIQ+ LW +LW P M+++SK+F AG+S AA +RFP+
Sbjct: 149 TINAVVYVIQIALWLVLWWKPVHLMVIISKMFFAGVSLFAALGFLLYGGRLFLMLQRFPV 208
Query: 198 ESKGRQKKLREVGRVATICFLCFLARCIMMCFDAFDKKADLDVLDHPILNFIYYLIVEIL 257
ESKGR+KKL+EVG V TICF CFL RCIMMCFDAFD ADLDVLDHPILNFIYYL+VEIL
Sbjct: 209 ESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDVLDHPILNFIYYLLVEIL 268
Query: 258 PSSLVLFILRRIPSKLRLAQYHPLN 282
PSSLVLFILR++P K + QYH +
Sbjct: 269 PSSLVLFILRKLPPKRGITQYHQIQ 293
>AT4G21790.1 | chr4:11569924-11572163 FORWARD LENGTH=292
Length = 291
Score = 300 bits (769), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 187/267 (70%)
Query: 16 DLVNGSTAWQDGIFLSLAALYGLVAASSFIQVVRIQYRVPEYGWTTQKVFQLLNFIVNGA 75
D VN ST WQDGIF +L Y LV+A + +Q++RIQ RVPEYGWTTQKVF L+NF+VNG
Sbjct: 25 DDVNESTQWQDGIFFALCGAYALVSAVALVQLIRIQMRVPEYGWTTQKVFHLMNFVVNGV 84
Query: 76 RCSIFAVRRQVQQVNPEIFQHVILDLPGLAFFTTYAMLALFWAEISYQARGLETEGLRSG 135
R +F QV V+P+ V+LDLPGL FF+ Y +L LFWAEI +QAR L T+ LR
Sbjct: 85 RAVLFGFHMQVFLVHPKALCWVLLDLPGLLFFSAYTLLVLFWAEIYHQARSLPTDKLRIT 144
Query: 136 FYTINGVIYVIQVLLWALLWHNPNPSMIVLSKLFIAGLSFSAAXXXXXXXXXXXXXXKRF 195
+ ++N +Y+ Q+ +WA +W + N ++ ++ K+FIA +SF AA +RF
Sbjct: 145 YISVNVAVYLAQIGIWAYIWVHDNSTVELVGKIFIAVVSFIAALGFLLYGGRLFFMLRRF 204
Query: 196 PIESKGRQKKLREVGRVATICFLCFLARCIMMCFDAFDKKADLDVLDHPILNFIYYLIVE 255
PIESKGR+KKL EVG V ICF CFL RC+++ AFDK LDVLDHP+LN IYY++VE
Sbjct: 205 PIESKGRRKKLHEVGSVTAICFTCFLIRCVVVAVSAFDKDLTLDVLDHPVLNLIYYMVVE 264
Query: 256 ILPSSLVLFILRRIPSKLRLAQYHPLN 282
+LPS+LVLFILR++P K AQYHP+
Sbjct: 265 VLPSALVLFILRKLPPKRVSAQYHPIQ 291
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.330 0.143 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,244,615
Number of extensions: 189448
Number of successful extensions: 515
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 3
Length of query: 284
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 187
Effective length of database: 8,447,217
Effective search space: 1579629579
Effective search space used: 1579629579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 111 (47.4 bits)