BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0672400 Os02g0672400|AK064365
         (366 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09290.1  | chr1:3001682-3003715 REVERSE LENGTH=349            269   2e-72

>AT1G09290.1 | chr1:3001682-3003715 REVERSE LENGTH=349
          Length = 348

 Score =  269 bits (687), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/326 (45%), Positives = 208/326 (63%), Gaps = 16/326 (4%)

Query: 43  LQPWEQHAAVINLPRYDYRASGSLLLRSHSGFLITCPIKREKSATKEAISILENSIGHAN 102
           L PWEQH+++I++PR+DY+A  SLL  SHSGFL+TC IKREKSATKE +SIL   IG   
Sbjct: 32  LTPWEQHSSIISIPRFDYKAPSSLLHHSHSGFLVTCNIKREKSATKEVMSILGKYIG--- 88

Query: 103 SYSSEKSEPSDTEVSAKKRKICSETPDIENSGDAVTYEKGDASETTGSVEKDSVSPHSKT 162
           S   EK E  ++  S KK+K+C++  + E  G+     + DA + TG       +P+ + 
Sbjct: 89  SMHEEKPEVLNSTAS-KKQKVCAQ--ETEEGGEKTVPLENDALQETGE------NPNVED 139

Query: 163 SK--NVDDTSNLSLVKLSRSGLLFFSFP-SGGLRVVQMLTQMFHSLHSGKLKSPQWCHRI 219
            K  N +  S +SLVKL++SGLL F+FP         +++++F S+ SG LK+P WCHRI
Sbjct: 140 LKLANEEHNSLMSLVKLTKSGLLLFTFPVENSPNTTNIVSRVFQSMESGALKAPIWCHRI 199

Query: 220 FPIQETCVLSEAELHTTVSKLFLDFVKSKEDQ-DEPIKFAVGYNRRGIDETEMKGQKNGN 278
           FP+Q TC L+E EL  TVSKL   FV  K++   +P+KFA GY RRG +ET+ K +K+ +
Sbjct: 200 FPVQATCGLTEKELRETVSKLVQRFVNDKDNTLSKPVKFAAGYQRRGAEETKGKIRKDAS 259

Query: 279 EGSKQQTLMDRDQCFKVVAGAVKSVAENSIVDLRSPEVAVLVEMLPIXXXXXXXXXXXXX 338
           +   Q  L+DR +CF+ VA  VK +  +S+VDL+SPE+ VLVE+LP+             
Sbjct: 260 DVLVQCPLLDRIKCFETVAAGVKDIVPDSVVDLKSPELCVLVELLPLSRISSGSFVAAVS 319

Query: 339 XXXXELISTKPRLCVKALVPDAKAAK 364
                L+STKP+LC+K LVP++K  K
Sbjct: 320 VLPHRLVSTKPKLCIKPLVPESKHKK 345



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.128    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,484,022
Number of extensions: 253378
Number of successful extensions: 778
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 774
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 266
Effective length of database: 8,364,969
Effective search space: 2225081754
Effective search space used: 2225081754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)