BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0669100 Os02g0669100|AY587109
         (290 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20450.1  | chr1:7088235-7089107 REVERSE LENGTH=261             58   5e-09

>AT1G20450.1 | chr1:7088235-7089107 REVERSE LENGTH=261
          Length = 260

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 55/112 (49%), Gaps = 32/112 (28%)

Query: 179 GDHAKTEATLPRAP---------EEEKKGFLDKIKEKLPGGHKKPEDXXXXXXXXXXXXX 229
           GD      T+P AP         EEEKKGF+DKIKEKLPG  KKPED             
Sbjct: 162 GDDVPVVTTMP-APHSVEDHKPEEEEKKGFMDKIKEKLPGHSKKPEDSQVVNTTPLV--- 217

Query: 230 XXXXXXXXXXXXXXEEVSSPDG---KEKKGILGKIMEKLPGYH-KGSGEEDK 277
                          E ++P     +EKKG + KI EKLPGYH K +GEE+K
Sbjct: 218 ---------------ETATPIADIPEEKKGFMDKIKEKLPGYHAKTTGEEEK 254



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.303    0.129    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,378,961
Number of extensions: 139836
Number of successful extensions: 380
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 3
Length of query: 290
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 192
Effective length of database: 8,419,801
Effective search space: 1616601792
Effective search space used: 1616601792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 111 (47.4 bits)