BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0664200 Os02g0664200|AK059298
         (242 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71220.2  | chr1:26841664-26851730 FORWARD LENGTH=1615         431   e-121

>AT1G71220.2 | chr1:26841664-26851730 FORWARD LENGTH=1615
          Length = 1614

 Score =  431 bits (1107), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 193/218 (88%), Positives = 210/218 (96%)

Query: 1    LVTYKWPTWLHKQKEKQRIIWAYKILFLDVIFPLSLRKVIFVDADQIVRADMGELYDMNL 60
            L+TYKWP+WLHKQKEKQRIIWAYKILFLDVIFPLSL KVIFVDADQI+R DMGELYDM++
Sbjct: 1362 LITYKWPSWLHKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQIIRTDMGELYDMDI 1421

Query: 61   KGRPLAYTPFCDNNKEMDGYRFWKQGFWKDHLRGRPYHISALYVVDLAKFRQTASGDTLR 120
            KGRPLAYTPFCDNN+EMDGY+FWKQGFWK+HLRGRPYHISALYVVDL KFR+TA+GD LR
Sbjct: 1422 KGRPLAYTPFCDNNREMDGYKFWKQGFWKEHLRGRPYHISALYVVDLVKFRETAAGDNLR 1481

Query: 121  VFYETLSKDPNSLSNLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNATKARAKTIDLCNN 180
            VFYETLSKDPNSLSNLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNATKA+A+TIDLCNN
Sbjct: 1482 VFYETLSKDPNSLSNLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNATKAKARTIDLCNN 1541

Query: 181  PMTKEPKLQGAKRIVPEWVDLDSEARQFTARILGDNPE 218
            PMTKEPKLQGA+RIV EW DLD EAR+FTA+ILG++ E
Sbjct: 1542 PMTKEPKLQGARRIVTEWPDLDLEARKFTAKILGEDVE 1579



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,348,951
Number of extensions: 222589
Number of successful extensions: 488
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 146
Effective length of database: 8,474,633
Effective search space: 1237296418
Effective search space used: 1237296418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)