BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0661300 Os02g0661300|AK106503
         (232 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22600.1  | chr4:11900211-11901032 REVERSE LENGTH=274           73   1e-13

>AT4G22600.1 | chr4:11900211-11901032 REVERSE LENGTH=274
          Length = 273

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 59/209 (28%)

Query: 73  HWSALDAAARQDPAQAVSAGDWRSPLELPFLWVGDLHPXXXXXXXXXXXXXXXX------ 126
           ++  LD AA  +    +    WR+ LE PFL++GD+HP                      
Sbjct: 61  YYETLDLAADHNTIPYLLFPSWRNSLETPFLFLGDIHPYLLTNLLRSFIDRENQDSDDED 120

Query: 127 -------------------------XXXXDRVDRRIRAAVPSISDRLRRVQEAFI----- 156
                                        D+++  +R  VP + DR+R+ Q +F+     
Sbjct: 121 EETSLDLVNQPLKMTMAWKDPSDELVKRIDQIECTMRLMVPGLMDRMRKTQRSFVARVSE 180

Query: 157 ---------------------SAEVSGAADVEAFLEELKDVALDANRLRRGVLSELVAAA 195
                                S  V  AA +E  +EEL  + +DANRLR+ V+ ++V A 
Sbjct: 181 SWVSSYQVGKKKKLTATVATASTSVDEAAKIE--MEELVSIFVDANRLRKSVIMDIVGAT 238

Query: 196 GGYQAALFLEALSRFVLSMHDPEVLRRFD 224
             +QAALFLE L +F+    D  +L+ F+
Sbjct: 239 SEHQAALFLEGLCQFLAGFKDQILLQDFE 267



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,723,338
Number of extensions: 75269
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 137
Effective length of database: 8,502,049
Effective search space: 1164780713
Effective search space used: 1164780713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)