BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0658500 Os02g0658500|AK099591
(402 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G07670.1 | chr5:2430421-2432065 FORWARD LENGTH=477 221 7e-58
AT5G51380.1 | chr5:20875945-20877779 FORWARD LENGTH=480 216 2e-56
AT5G51370.2 | chr5:20872783-20874192 FORWARD LENGTH=447 202 2e-52
AT5G23340.1 | chr5:7856314-7857983 FORWARD LENGTH=406 51 8e-07
AT2G25490.1 | chr2:10848018-10850275 REVERSE LENGTH=629 51 9e-07
AT4G15475.1 | chr4:8845927-8848701 FORWARD LENGTH=611 50 3e-06
>AT5G07670.1 | chr5:2430421-2432065 FORWARD LENGTH=477
Length = 476
Score = 221 bits (562), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 136/336 (40%), Positives = 183/336 (54%), Gaps = 15/336 (4%)
Query: 57 DQTLEFSDGLLLRVLACLPEPHLTGAASLVCXXXXXXXXXXXXXXXXXDWAFVTH-RLHH 115
D TL D +L+RV+ +P SLVC DW F++ RL
Sbjct: 60 DFTLLLPDLILIRVIQKIPNSQRKNL-SLVCKRWFRLHGRLVRSFKVSDWEFLSSGRLIS 118
Query: 116 RFPELADLDLFPASIXXXXXXXXXXXXXXCAEVSLTLDTGA--DPPLVACRFLADDVLDR 173
RFP L +DL + VS T+ G+ L+ ++++R
Sbjct: 119 RFPNLETVDLVSGCLISPPNLGILVNHRI---VSFTVGVGSYQSWSFFEENLLSVELVER 175
Query: 174 GLVAVAASFPNLRRLSATAASESGGLMDIAGGCATLQELELHRCTDLALRPVSAFAHLQI 233
GL A+A NLR+L T SE G L+++A C+ LQELELH+C+D L + AF +LQI
Sbjct: 176 GLKALAGGCSNLRKLVVTNTSELG-LLNVAEECSRLQELELHKCSDSVLLGIGAFENLQI 234
Query: 234 LRLVAASSALYGTSEDGGVTDIGLTILAHGCKRLVKLELVGCEGSYDGIAAVGRCCAMLE 293
LRLV LY + V+DIGL ILA GCKRLVKLELVGCEG +DGI +G CC MLE
Sbjct: 235 LRLVGNVDGLYNSL----VSDIGLMILAQGCKRLVKLELVGCEGGFDGIKEIGECCQMLE 290
Query: 294 ELTIANHKMDNGWLAALAFCGNLKTLRLQGCCRIDDDPGPAEHLGACL-TLESXXXXXXX 352
ELT+ ++KM++GWL L +C NLKTL+L C +ID+DP E L C LE
Sbjct: 291 ELTVCDNKMESGWLGGLRYCENLKTLKLVSCKKIDNDPD--ESLSCCCPALERLQLEKCQ 348
Query: 353 XXXXXXXXXXXXVCEGARELLVQNCWGLEDDMFAMA 388
+CE ARE++ Q+CWGL++D+F++A
Sbjct: 349 LRDKNTVKALFKMCEAAREIVFQDCWGLDNDIFSLA 384
>AT5G51380.1 | chr5:20875945-20877779 FORWARD LENGTH=480
Length = 479
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 192/337 (56%), Gaps = 8/337 (2%)
Query: 57 DQTLEFSDGLLLRVLACLPEPHLTGAASLVCXXXXXXXXXXXXXXXXXDWAFV-THRLHH 115
D+TL SD LLL++L LPE SLVC DW F+ + RL
Sbjct: 62 DRTLSLSDSLLLKILEKLPESQ-NEDVSLVCKRWLSVQGRRLRSMKVFDWEFLLSGRLVS 120
Query: 116 RFPELADLDLFPASIXXXXXXXXXXXXXXCAEVSLTLDTGADPPLVACRFLADDVLDRGL 175
RFP+L +DL A + ++ D+ + V L ++++D+GL
Sbjct: 121 RFPKLTSVDLVNACFNPSSNSGILLCHTSIS-FHVSTDSSLNLNFVEESLLDNEMVDKGL 179
Query: 176 VAVAASFPNLRRLSATAASESGGLMDIAGGCATLQELELHRCTDLALRPVSAFAHLQILR 235
+ +L +L A+E G L+ +A C+ LQELELH+C+D LR ++A +L+ LR
Sbjct: 180 RVLGRGSFDLIKLVVINATELG-LLSLAEDCSDLQELELHKCSDNLLRGIAACENLRGLR 238
Query: 236 LVAASSALYGTSEDGGVTDIGLTILAHGCKRLVKLELVGCEGSYDGIAAVGRCCAMLEEL 295
LV + LY +S V+DIGLTILA GCKRLVKLEL GCEGS+DGI A+G+CC +LEEL
Sbjct: 239 LVGSVDGLYSSS----VSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCEVLEEL 294
Query: 296 TIANHKMDNGWLAALAFCGNLKTLRLQGCCRIDDDPGPAEHLGACLTLESXXXXXXXXXX 355
+I +H+MD+GW+AAL++ +LKTL + C +ID PGP + LG+C LES
Sbjct: 295 SICDHRMDDGWIAALSYFESLKTLLISSCRKIDSSPGPGKLLGSCPALESLQLRRCCLND 354
Query: 356 XXXXXXXXXVCEGARELLVQNCWGLEDDMFAMAGLCR 392
VC+G ++ +Q+CWGL+DD F++A R
Sbjct: 355 KEGMRALFKVCDGVTKVNIQDCWGLDDDSFSLAKAFR 391
>AT5G51370.2 | chr5:20872783-20874192 FORWARD LENGTH=447
Length = 446
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/284 (41%), Positives = 164/284 (57%), Gaps = 9/284 (3%)
Query: 110 THRLHHRFPELADLDLFPASIXXXXXXXXXXXXXXCAEVSLTLDT-GADPPLVACRFLAD 168
+ RL RFP L +DL A + +S L + ++ + L
Sbjct: 80 SERLTTRFPNLTHVDLVNACMNPRVNSGILFCH---KSISFHLSSDSSNWEFLEENLLHS 136
Query: 169 DVLDRGLVAVAASFPNLRRLSATAASESGGLMDIAGGCATLQELELHRCTDLALRPVSAF 228
DV+DRGL ++ +L L ASE G L+ +AG C+ LQELELH+C D L ++A
Sbjct: 137 DVIDRGLRILSRESFDLLNLKVINASELG-LLSLAGDCSDLQELELHKCNDNLLHGIAAC 195
Query: 229 AHLQILRLVAASSALYGTSEDGGVTDIGLTILAHGCKRLVKLELVGCEGSYDGIAAVGRC 288
+L+ LRLV + LY +S V+DIGLT LA GC+ LVKLEL GCEGS+DGI A+G+C
Sbjct: 196 KNLKGLRLVGSVDGLYSSS----VSDIGLTFLAQGCRSLVKLELSGCEGSFDGIKAIGQC 251
Query: 289 CAMLEELTIANHKMDNGWLAALAFCGNLKTLRLQGCCRIDDDPGPAEHLGACLTLESXXX 348
C +LEEL+I +H+MD+GW+AAL++ +LK LR+ C +ID PGP + L +C +ES
Sbjct: 252 CEVLEELSICDHRMDDGWIAALSYFESLKILRISSCRKIDASPGPEKLLRSCPAMESLQL 311
Query: 349 XXXXXXXXXXXXXXXXVCEGARELLVQNCWGLEDDMFAMAGLCR 392
VC+GA E+ +Q+CWGL DD F++A R
Sbjct: 312 KRCCLNDKEGIKALFKVCDGATEVNIQDCWGLSDDCFSLAKAFR 355
>AT5G23340.1 | chr5:7856314-7857983 FORWARD LENGTH=406
Length = 405
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 20/172 (11%)
Query: 170 VLDRGLVAVAASFPNLRRLSATAASE--SGGLMDIAGGCATLQELELHRC---TDLALRP 224
+ D GL ++ L+ L + + GL +A GC L+ L L C TD +L+
Sbjct: 111 ITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDESLKS 170
Query: 225 VSAFAH-LQILRLVAASSALYGTSEDGGVTDIGLTILAHGCKRLVKLELVGCEGSYD-GI 282
+S L+ L L ++ +TD GL L GC+++ L++ C D G+
Sbjct: 171 LSERCRDLEALGLQGCTN----------ITDSGLADLVKGCRKIKSLDINKCSNVGDAGV 220
Query: 283 AAVGRCCA-MLEELTIAN-HKMDNGWLAALA-FCGNLKTLRLQGCCRIDDDP 331
++V + CA L+ L + + +K+ N +++LA FC NL+TL + GC I D+
Sbjct: 221 SSVAKACASSLKTLKLLDCYKVGNESISSLAQFCKNLETLIIGGCRDISDES 272
>AT2G25490.1 | chr2:10848018-10850275 REVERSE LENGTH=629
Length = 628
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 76/179 (42%), Gaps = 38/179 (21%)
Query: 170 VLDRGLVAVAASFPNLRRLSATAASE--SGGLMDIAGGCATLQELELHRCTDLALRPVSA 227
V D GL ++ S P+L LS S GL++IA GCA L++LEL+RC+
Sbjct: 164 VSDLGLRSIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCST-------- 215
Query: 228 FAHLQILRLVAASSALYGTSEDGGVTDIGLTILAHGCKRLVKLELVGCEGSYD-GIAAVG 286
+TD GL +A C L +L L C D G+ A+
Sbjct: 216 ------------------------ITDKGLVAIAKSCPNLTELTLEACSRIGDEGLLAIA 251
Query: 287 RCCAMLEELTIANHKM--DNGWLAALAFCG-NLKTLRLQGCCRIDDDPGPAEHLGACLT 342
R C+ L+ ++I N + D G + L+ +L L+LQ D H G +T
Sbjct: 252 RSCSKLKSVSIKNCPLVRDQGIASLLSNTTCSLAKLKLQMLNVTDVSLAVVGHYGLSIT 310
>AT4G15475.1 | chr4:8845927-8848701 FORWARD LENGTH=611
Length = 610
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 76/173 (43%), Gaps = 23/173 (13%)
Query: 167 ADDVLDRGLVAVAASFPNLRRLSAT--AASESGGLMDIAGGCATLQELELHRCT--DLAL 222
+ + D GL A+A FP + LS S GL +A C +L+ L+L C D L
Sbjct: 124 SSSLTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQGCYVGDQGL 183
Query: 223 RPVSAF-AHLQILRLVAASSALYGTSEDGGVTDIGLTILAHGCKRLVKLELVGCEGSYD- 280
V F L+ L L G+TD+G+ L GC + L+ +G S
Sbjct: 184 AAVGKFCKQLEELNLRFCE----------GLTDVGVIDLVVGCSK--SLKSIGVAASAKI 231
Query: 281 ---GIAAVGRCCAMLEELTI-ANHKMDNGWLAALAFCGNLKTLRLQGCCRIDD 329
+ AVG C +LE L + + + D G +A C LK L+LQ C + D
Sbjct: 232 TDLSLEAVGSHCKLLEVLYLDSEYIHDKGLIAVAQGCHRLKNLKLQ-CVSVTD 283
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,272,019
Number of extensions: 235165
Number of successful extensions: 729
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 702
Number of HSP's successfully gapped: 17
Length of query: 402
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,337,553
Effective search space: 2509603453
Effective search space used: 2509603453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)