BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0655500 Os02g0655500|AK072538
(204 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47310.1 | chr5:19201325-19202674 FORWARD LENGTH=246 252 1e-67
AT4G17486.1 | chr4:9749992-9751201 REVERSE LENGTH=225 246 7e-66
AT1G47740.1 | chr1:17567903-17569035 FORWARD LENGTH=280 204 3e-53
AT5G25170.1 | chr5:8693257-8694438 FORWARD LENGTH=219 202 1e-52
AT2G25190.1 | chr2:10734187-10735426 FORWARD LENGTH=241 199 7e-52
AT4G31980.1 | chr4:15464905-15469204 FORWARD LENGTH=681 197 4e-51
AT1G80690.1 | chr1:30329283-30330524 REVERSE LENGTH=228 196 6e-51
AT4G25680.1 | chr4:13088425-13089952 FORWARD LENGTH=253 82 2e-16
AT4G25660.1 | chr4:13083677-13084989 FORWARD LENGTH=256 80 7e-16
AT3G07090.1 | chr3:2243153-2244476 REVERSE LENGTH=266 69 2e-12
>AT5G47310.1 | chr5:19201325-19202674 FORWARD LENGTH=246
Length = 245
Score = 252 bits (643), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 117/210 (55%), Positives = 159/210 (75%), Gaps = 7/210 (3%)
Query: 2 DTGNKGTATPVLLNVYDLTPANDYLYWLGFGVFHSGIEVHGMEYGFGAHDFPSSGVFEVE 61
+ +G+ TPV LNVYDLTP N+YLYW G G+FHSGIE HG EYG+GAH++ SSGVFEVE
Sbjct: 20 EINGEGSLTPVYLNVYDLTPVNNYLYWFGLGIFHSGIEAHGFEYGYGAHEYSSSGVFEVE 79
Query: 62 SKSCPGFIYRKTVWLGTTDMSHGEYRSFIEKLAGKYHGNSYHLVSKNCNHFTDDVCKNLT 121
+SCPGFI+R++V LGTT MS ++RSF+EKL+ KYHG++YHL++KNCNHFT++VC +T
Sbjct: 80 PRSCPGFIFRRSVLLGTTSMSRSDFRSFMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQVT 139
Query: 122 GKPIPSWVNRLARVGSFFDCLLPESVQVSPVGRVPTLRPVADDD------LDSISTVSDN 175
GKPIP W+NR+ARVGSF +C+LPES+Q+S V L D+D S+S +D
Sbjct: 140 GKPIPGWINRMARVGSFCNCILPESIQLSSVNHPEALEFSDDNDGSEESVASSVSYETDG 199
Query: 176 NEEDKHLLPAPSNDLHSV-DVPLKLAKDVL 204
D HL+ AP++D+ + D P++LA+++L
Sbjct: 200 EGSDHHLITAPNSDIAYLQDRPVRLARELL 229
>AT4G17486.1 | chr4:9749992-9751201 REVERSE LENGTH=225
Length = 224
Score = 246 bits (627), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 155/204 (75%), Gaps = 3/204 (1%)
Query: 2 DTGNKGTATPVLLNVYDLTPANDYLYWLGFGVFHSGIEVHGMEYGFGAHDFPSSGVFEVE 61
++ + TPV LNVYDLTP N+YLYW G G+FHSGIE H +EY +GAH++P+SGV+EVE
Sbjct: 18 ESSGEAALTPVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVYEVE 77
Query: 62 SKSCPGFIYRKTVWLGTTDMSHGEYRSFIEKLAGKYHGNSYHLVSKNCNHFTDDVCKNLT 121
++CPGFI+R++V LGTT MS ++RS++EKL+ KYHG++YHL++KNCNHFT++VC LT
Sbjct: 78 PRNCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLT 137
Query: 122 GKPIPSWVNRLARVGSFFDCLLPESVQVSPVGRVPTLRPVADDDLDS--ISTVSDNNEED 179
GKPIP W+NRLARVGSF +CLLPES+Q++ V +P +D+D + S+VSD +
Sbjct: 138 GKPIPGWINRLARVGSFCNCLLPESIQLTAVSALPERLEFSDEDESNSEASSVSDEEGSE 197
Query: 180 KHLLPAPSNDL-HSVDVPLKLAKD 202
+HL+ ++ + + P++L ++
Sbjct: 198 QHLINVADREIVYLQNKPVRLTRE 221
>AT1G47740.1 | chr1:17567903-17569035 FORWARD LENGTH=280
Length = 279
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 117/152 (76%), Gaps = 5/152 (3%)
Query: 10 TPVLLNVYDLTPANDYLYWLGFGVFHSGIEVHGMEYGFGAHDFPSSGVFEVESKSCPGFI 69
PV LNVYDLTP N Y+YW G G+FHSG+EVHG+EY FGAHD+ +SGVFEVE + CPGF
Sbjct: 69 APVYLNVYDLTPINGYIYWAGLGIFHSGVEVHGVEYAFGAHDYATSGVFEVEPRQCPGFK 128
Query: 70 YRKTVWLGTTDMSHGEYRSFIEKLAGKYHGNSYHLVSKNCNHFTDDVCKNLTGKPIPSWV 129
++K++++GTT+++ + R F+E +A Y+GN YHL+ KNCNHF DVC LTGK IP WV
Sbjct: 129 FKKSIFIGTTNLNPTQVREFMEDMACSYYGNMYHLIVKNCNHFCQDVCYKLTGKKIPKWV 188
Query: 130 NRLARVGSFFDCLLPESVQVSPV-----GRVP 156
NRLA++GS C+LPES++++ V G++P
Sbjct: 189 NRLAQIGSVCSCILPESLKITAVCHDPDGQIP 220
>AT5G25170.1 | chr5:8693257-8694438 FORWARD LENGTH=219
Length = 218
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 91/155 (58%), Positives = 115/155 (74%), Gaps = 2/155 (1%)
Query: 3 TGNKGT--ATPVLLNVYDLTPANDYLYWLGFGVFHSGIEVHGMEYGFGAHDFPSSGVFEV 60
TG K + PV LNVYDLTP N Y YWLG G++HSG+EVHG+EYGFGAHD ++G+FEV
Sbjct: 9 TGRKKKPGSVPVYLNVYDLTPINGYAYWLGLGIYHSGVEVHGVEYGFGAHDHSTTGIFEV 68
Query: 61 ESKSCPGFIYRKTVWLGTTDMSHGEYRSFIEKLAGKYHGNSYHLVSKNCNHFTDDVCKNL 120
E K CPGF +RK++ +G TD+ R F+EKLA +Y GNSYHL++KNCNHF +DVC L
Sbjct: 69 EPKQCPGFTFRKSILIGRTDLDPENVRVFMEKLAEEYSGNSYHLITKNCNHFCNDVCVQL 128
Query: 121 TGKPIPSWVNRLARVGSFFDCLLPESVQVSPVGRV 155
T + IPSWVNRLAR G F +C+LP + + V +V
Sbjct: 129 TRRSIPSWVNRLARFGLFCNCVLPAELNETKVRQV 163
>AT2G25190.1 | chr2:10734187-10735426 FORWARD LENGTH=241
Length = 240
Score = 199 bits (506), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 86/147 (58%), Positives = 109/147 (74%)
Query: 9 ATPVLLNVYDLTPANDYLYWLGFGVFHSGIEVHGMEYGFGAHDFPSSGVFEVESKSCPGF 68
+ PV LNVYDLTP N Y YWLG GVFHSG+EVHG+EY FGAH+ S+G+FEVE K CPGF
Sbjct: 16 SVPVYLNVYDLTPMNAYGYWLGLGVFHSGVEVHGVEYAFGAHESSSTGIFEVEPKKCPGF 75
Query: 69 IYRKTVWLGTTDMSHGEYRSFIEKLAGKYHGNSYHLVSKNCNHFTDDVCKNLTGKPIPSW 128
+RK++ +G TD+ E R F+EKLA +Y GN YHL+++NCNHF ++VC L K IP W
Sbjct: 76 TFRKSILVGKTDLVAKEVRVFMEKLAEEYQGNKYHLITRNCNHFCNEVCLKLAQKSIPRW 135
Query: 129 VNRLARVGSFFDCLLPESVQVSPVGRV 155
VNRLAR+G +C+LP + + V RV
Sbjct: 136 VNRLARLGVLCNCVLPPRLNEAKVRRV 162
>AT4G31980.1 | chr4:15464905-15469204 FORWARD LENGTH=681
Length = 680
Score = 197 bits (500), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 89/151 (58%), Positives = 113/151 (74%), Gaps = 1/151 (0%)
Query: 5 NKGTATPVLLNVYDLTPANDYLYWLGFGVFHSGIEVHGMEYGFGAHDFPSSGVFEVESKS 64
N GT PV LNVYDLTP N Y YWLG G++HSG+EVHG+EYG+GAH+ SSG+FEVE K
Sbjct: 13 NSGTV-PVYLNVYDLTPMNVYGYWLGIGIYHSGLEVHGVEYGYGAHEKSSSGIFEVEPKK 71
Query: 65 CPGFIYRKTVWLGTTDMSHGEYRSFIEKLAGKYHGNSYHLVSKNCNHFTDDVCKNLTGKP 124
CPGF +RK++ +G T+M E RSF+EKL+ +Y GN YHL+++NCNHF + V LT K
Sbjct: 72 CPGFTFRKSILVGETEMKAKEVRSFMEKLSEEYQGNKYHLITRNCNHFCNHVSLKLTHKS 131
Query: 125 IPSWVNRLARVGSFFDCLLPESVQVSPVGRV 155
IPSWVNRLAR+G +C+LP + + V RV
Sbjct: 132 IPSWVNRLARLGFLCNCVLPACLNETKVKRV 162
>AT1G80690.1 | chr1:30329283-30330524 REVERSE LENGTH=228
Length = 227
Score = 196 bits (499), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 85/153 (55%), Positives = 113/153 (73%), Gaps = 4/153 (2%)
Query: 1 MDTGNKGTATPVLLNVYDLTPANDYLYWLGFGVFHSGIEVHGMEYGFGAHDFPSSGVFEV 60
+D GN PV LNVYDLTP N Y YWLG GV+HSG+EVHG+EY +GAH++PS+G+FE
Sbjct: 10 VDRGN----VPVYLNVYDLTPINGYAYWLGLGVYHSGVEVHGIEYAYGAHEYPSTGIFEG 65
Query: 61 ESKSCPGFIYRKTVWLGTTDMSHGEYRSFIEKLAGKYHGNSYHLVSKNCNHFTDDVCKNL 120
E K C GF +RK++ +G TD+ E R+ +E+LA Y G+SY+L++KNCNHF D+ C L
Sbjct: 66 EPKQCEGFTFRKSILIGKTDLGPLEVRATMEQLADNYKGSSYNLITKNCNHFCDETCIKL 125
Query: 121 TGKPIPSWVNRLARVGSFFDCLLPESVQVSPVG 153
TG PIPSWVNRLAR+G +C+LP ++ + G
Sbjct: 126 TGNPIPSWVNRLARIGFMCNCVLPATINATRFG 158
>AT4G25680.1 | chr4:13088425-13089952 FORWARD LENGTH=253
Length = 252
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 16/142 (11%)
Query: 10 TPVLLNVYDLT-----PANDYLYWLGF---------GVFHSGIEVHGM-EYGFGAHDFPS 54
T V+L++YD+T N+ + + G+FHS I+V+G E+ +G +
Sbjct: 2 TEVVLHIYDVTNSGSEKTNNTIVQINRFFKDGIGLGGIFHSAIQVYGNDEWSYGYCEL-G 60
Query: 55 SGVFEVESKSCPGFIYRKTVWLGTTDMSHGEYRSFIEKLAGKYHGNSYHLVSKNCNHFTD 114
+GVF S P + YR+ + LG TD + + +L+ ++ G++Y L+SKNCNHF D
Sbjct: 61 TGVFSCPSGKNPMYTYREKIVLGKTDCTIFMVNQMLRELSREWPGHTYDLLSKNCNHFCD 120
Query: 115 DVCKNLTGKPIPSWVNRLARVG 136
+C L IP WVNR A G
Sbjct: 121 VLCDRLGVPKIPGWVNRFANAG 142
>AT4G25660.1 | chr4:13083677-13084989 FORWARD LENGTH=256
Length = 255
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Query: 32 GVFHSGIEVHGM-EYGFGAHDFPSSGVFEVESKSCPGFIYRKTVWLGTTDMSHGEYRSFI 90
G+FHS I+V+G E+ +G + +GVF S P + YR+ + LG TD + +
Sbjct: 38 GIFHSAIQVYGNDEWSYGYCE-QGTGVFSCPSGKNPMYTYREKIVLGKTDCTIFMVNQIL 96
Query: 91 EKLAGKYHGNSYHLVSKNCNHFTDDVCKNLTGKPIPSWVNRLARVG 136
+L+ ++ G++Y L+SKNCNHF D +C L IP WVNR A G
Sbjct: 97 RELSREWPGHTYDLLSKNCNHFCDVLCDRLGVPKIPGWVNRFAHAG 142
>AT3G07090.1 | chr3:2243153-2244476 REVERSE LENGTH=266
Length = 265
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 21/164 (12%)
Query: 12 VLLNVYDLTP------ANDYLYWLGFGVFHSGIEVHGMEYGFGAHDFPSSGVFEVESKSC 65
V LNVYDL+ + L + GV+H+GI V+G EY FG G+ +
Sbjct: 8 VTLNVYDLSQGLARQLSQSLLGKVIEGVWHTGIVVYGNEYFFGG------GIQHLPVGRT 61
Query: 66 PGFIYRKTVWLGTTDMSHGEYRSFIEKLAGKYHGNSYHLVSKNCNHFTDDVCKNLTGKPI 125
P +T+ LG + + + ++E+++ +Y SY+L++ NCN+F+++V + L GK I
Sbjct: 62 PYGTPIRTIELGLSHVPKDVFEMYLEEISPRYTAESYNLLTHNCNNFSNEVAQFLVGKGI 121
Query: 126 PSWVNRL------ARVGSFFDCLLP---ESVQVSPVGRVPTLRP 160
P ++ +L + +G +L +++ V +VP RP
Sbjct: 122 PDYILQLPNDVLNSPMGGLIMPMLQGLETTLKAGAVPQVPQFRP 165
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.138 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,246,853
Number of extensions: 238582
Number of successful extensions: 574
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 10
Length of query: 204
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 110
Effective length of database: 8,529,465
Effective search space: 938241150
Effective search space used: 938241150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)