BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0654000 Os02g0654000|J090070E16
(128 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G16800.1 | chr4:9454931-9457000 REVERSE LENGTH=302 162 6e-41
AT1G60550.1 | chr1:22305988-22308092 REVERSE LENGTH=338 59 7e-10
AT4G16210.1 | chr4:9176864-9177978 REVERSE LENGTH=266 48 1e-06
AT3G06860.1 | chr3:2161926-2166009 FORWARD LENGTH=726 48 2e-06
AT4G29010.1 | chr4:14297312-14302016 REVERSE LENGTH=722 47 3e-06
>AT4G16800.1 | chr4:9454931-9457000 REVERSE LENGTH=302
Length = 301
Score = 162 bits (409), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 77/127 (60%), Positives = 102/127 (80%), Gaps = 1/127 (0%)
Query: 2 SSFTVLRRAGGTQRLPRIVGRSRAKEMIFTGRRCNATEAVMMGLANYCVPAGEAHEKALE 61
+ ++ AGGTQRL R+VGRS +KE+IFTGR+ +A EA GL N CV AGEAHEKA+E
Sbjct: 176 TGLAIIPGAGGTQRLSRLVGRSVSKELIFTGRKIDAIEAANKGLVNICVTAGEAHEKAIE 235
Query: 62 LAREIAQKGPLGIRMAKKAIDQGMQAADMPSALAVEGECYEQLLHTEDRLEGLAAFAERR 121
+A++I +KGPL I+MAKKAID+G++ +M S L VE CY++LL+T+DRLEGLAAFAE+R
Sbjct: 236 MAQQINEKGPLAIKMAKKAIDEGIE-TNMASGLEVEEMCYQKLLNTQDRLEGLAAFAEKR 294
Query: 122 KPVYSGK 128
KP+Y+G
Sbjct: 295 KPLYTGN 301
>AT1G60550.1 | chr1:22305988-22308092 REVERSE LENGTH=338
Length = 337
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 12 GTQRLPRIVGRSRAKEMIFTGRRCNATEAVMMGLANYCVPAGEAHEKALELAREIAQKGP 71
G+ + R+VG +A+EM F R A+EA MGL N VP + ++ ++ REI + P
Sbjct: 219 GSSIMSRLVGPKKAREMWFMTRFYTASEAEKMGLINTVVPLEDLEKETVKWCREILRNSP 278
Query: 72 LGIRMAK---KAIDQGMQAADMPSALAVEGECYEQLLHTEDRLEGLAAFAERRKPVYS 126
IR+ K A+D G + G+ TE+ EG A+ RR P +S
Sbjct: 279 TAIRVLKAALNAVDDGHAGLQ-----GLGGDATLLFYGTEEATEGRTAYMHRRPPDFS 331
>AT4G16210.1 | chr4:9176864-9177978 REVERSE LENGTH=266
Length = 265
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 4 FTVLRRAGGTQRLPRIVGRSRAKEMIFTGRRCNATEAVMMGLANYCVPAGEAHEKALELA 63
F + G +Q+L RI+G ++A+E+ T A A +G N+ V GEA +KA E+A
Sbjct: 138 FGIFPSWGLSQKLSRIIGANKAREVSLTSMPLTADVAGKLGFVNHVVEEGEALKKAREIA 197
Query: 64 REIAQKGPLGIRMAKKAIDQGMQAADMPSALAVEGE 99
I + + K I+ G++ D+ AL +E E
Sbjct: 198 EAIIKNEQGMVLRIKSVINDGLK-LDLGHALTLEKE 232
>AT3G06860.1 | chr3:2161926-2166009 FORWARD LENGTH=726
Length = 725
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 11 GGTQRLPRIVGRSRAKEMIFTGRRCNATEAVMMGLANYCVPAGEAHEKALELAREIA 67
GGTQRLPR+VG ++A EMI T + A E +GL + VP E A A +I
Sbjct: 149 GGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIV 205
>AT4G29010.1 | chr4:14297312-14302016 REVERSE LENGTH=722
Length = 721
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 11 GGTQRLPRIVGRSRAKEMIFTGRRCNATEAVMMGLANYCVPAGEAHEKALELAREIAQ 68
GGTQRLPR+VG ++A +MI + ++ E +GL + VP G+ + + A +IA+
Sbjct: 146 GGTQRLPRLVGLAKATDMILLSKSISSEEGHKLGLIDALVPPGDVLSTSRKWALDIAE 203
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,355,939
Number of extensions: 75064
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 5
Length of query: 128
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 41
Effective length of database: 8,721,377
Effective search space: 357576457
Effective search space used: 357576457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)