BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0644700 Os02g0644700|AK102176
         (298 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08510.1  | chr1:2691546-2693409 REVERSE LENGTH=413            341   2e-94
AT4G13050.1  | chr4:7617739-7619355 FORWARD LENGTH=368            164   6e-41
AT3G25110.1  | chr3:9146589-9148273 REVERSE LENGTH=363            158   3e-39

>AT1G08510.1 | chr1:2691546-2693409 REVERSE LENGTH=413
          Length = 412

 Score =  341 bits (875), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 164/263 (62%), Positives = 201/263 (76%), Gaps = 7/263 (2%)

Query: 39  SVCGIVAKPNPPPAAMQVKAQAQTLPKVNGTKVNL----KTVKPDMEETVPHSAPKTFYN 94
           ++ G+ + PN     M+VK  AQ  PK+NG KV L      V+ D E T  H AP+TF N
Sbjct: 31  NLAGLNSAPNS--GRMKVKPNAQAPPKINGKKVGLPGSVDIVRTDTE-TSSHPAPRTFIN 87

Query: 95  QLPDWSMXXXXXXXXXXXXEKQWTLLDWKPKKPDMLVDTFGFGRIIQDGMVFRQNFMIRS 154
           QLPDWSM            EKQW +LDWKP++ DMLVD FG GRI+QDG+VFRQNF IRS
Sbjct: 88  QLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRSDMLVDPFGIGRIVQDGLVFRQNFSIRS 147

Query: 155 YEIGADRTASIETLMNHLQETALNHVRTAGLLGDGFGATPEMSKRNLIWVVSKIQLLVEQ 214
           YEIGADR+ASIET+MNHLQETALNHV+TAGLLGDGFG+TPEM K+NLIWVV+++Q++V++
Sbjct: 148 YEIGADRSASIETVMNHLQETALNHVKTAGLLGDGFGSTPEMFKKNLIWVVTRMQVVVDK 207

Query: 215 YPAWGDMVQVDTWVAAAGKNGMRRDWHVRDYNSGRTILRATSVWVMMHKKTRRLSKMPDE 274
           YP WGD+V+VDTWV+ +GKNGMRRDW VRD N+G T+ RA+SVWVMM+K TRRLSK+P+E
Sbjct: 208 YPTWGDVVEVDTWVSQSGKNGMRRDWLVRDCNTGETLTRASSVWVMMNKLTRRLSKIPEE 267

Query: 275 VRAEIGPYFNDRSAITEEQSEKL 297
           VR EI PYF +   +  E S KL
Sbjct: 268 VRGEIEPYFVNSDPVLAEDSRKL 290



>AT4G13050.1 | chr4:7617739-7619355 FORWARD LENGTH=368
          Length = 367

 Score =  164 bits (415), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 104/147 (70%)

Query: 132 DTFGFGRIIQDGMVFRQNFMIRSYEIGADRTASIETLMNHLQETALNHVRTAGLLGDGFG 191
           D   FGR+++DG  +++ F++RSYE+G ++TA+IET+ N LQE A NHV+  G   DGF 
Sbjct: 69  DRLRFGRLMEDGFSYKEKFIVRSYEVGINKTATIETIANLLQEVACNHVQNVGFSTDGFA 128

Query: 192 ATPEMSKRNLIWVVSKIQLLVEQYPAWGDMVQVDTWVAAAGKNGMRRDWHVRDYNSGRTI 251
            T  M K +LIWV +++ + + +YPAW D+V+++TW  + G+ G RRDW ++D  +G  I
Sbjct: 129 TTLTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDCATGEVI 188

Query: 252 LRATSVWVMMHKKTRRLSKMPDEVRAE 278
            RATS WVMM++ TRRL ++ DEVR E
Sbjct: 189 GRATSKWVMMNQDTRRLQRVTDEVRDE 215



>AT3G25110.1 | chr3:9146589-9148273 REVERSE LENGTH=363
          Length = 362

 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 103/149 (69%)

Query: 130 LVDTFGFGRIIQDGMVFRQNFMIRSYEIGADRTASIETLMNHLQETALNHVRTAGLLGDG 189
           L D    G + +DG+ +++ F++RSYE+G+++TA++ET+ N LQE   NH ++ G   DG
Sbjct: 68  LADQLRLGSLTEDGLSYKEKFVVRSYEVGSNKTATVETIANLLQEVGCNHAQSVGFSTDG 127

Query: 190 FGATPEMSKRNLIWVVSKIQLLVEQYPAWGDMVQVDTWVAAAGKNGMRRDWHVRDYNSGR 249
           F  T  M K +LIWV +++ + + +YPAWGD+V+++TW  + G+ G RRDW ++D  +G 
Sbjct: 128 FATTTTMRKLHLIWVTARMHIEIYKYPAWGDVVEIETWCQSEGRIGTRRDWILKDSVTGE 187

Query: 250 TILRATSVWVMMHKKTRRLSKMPDEVRAE 278
              RATS WVMM++ TRRL K+ D+VR E
Sbjct: 188 VTGRATSKWVMMNQDTRRLQKVSDDVRDE 216



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,022,704
Number of extensions: 230065
Number of successful extensions: 559
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 3
Length of query: 298
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 200
Effective length of database: 8,419,801
Effective search space: 1683960200
Effective search space used: 1683960200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)