BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0640700 Os02g0640700|AK106833
(522 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14570.2 | chr1:4983770-4987192 FORWARD LENGTH=469 118 8e-27
AT4G14250.1 | chr4:8208985-8213237 REVERSE LENGTH=822 90 3e-18
>AT1G14570.2 | chr1:4983770-4987192 FORWARD LENGTH=469
Length = 468
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 79/131 (60%), Gaps = 5/131 (3%)
Query: 222 LAEMYRRPRELMHDADFHSTKVHAARQDRWLLLNLQSAGEFASQMHNRDLWADQVIARVV 281
LA +YR P LM F K ++ QD+WLL+NLQS EF+S M NRD WA+ +++ +
Sbjct: 171 LASLYRPPFHLMFQGSFEQAKTTSSSQDKWLLVNLQSTTEFSSHMLNRDTWANDAVSQTI 230
Query: 282 RESFVFSLLENSYGDDDDEASKVCCFYKLHDQLPAVLVIDPITGQMLAKWSGVIQPETFL 341
+ +F+F + DD E KVC +YKL + +P VLVIDP TGQ + W+G++ PE L
Sbjct: 231 KANFIFWQVY----DDTTEGRKVCTYYKL-ESIPVVLVIDPTTGQRMRMWTGMVDPENLL 285
Query: 342 VDIEEYSKSKP 352
D+ + P
Sbjct: 286 EDLVPFMDGGP 296
>AT4G14250.1 | chr4:8208985-8213237 REVERSE LENGTH=822
Length = 821
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Query: 229 PRELMHDADFHSTKVHAARQDRWLLLNLQSAGEFASQMHNRDLWADQVIARVVRESFVFS 288
P ++H+ F K + ++ WL++NLQS E S + NRD+WA+ ++R + F+
Sbjct: 505 PSYILHEGLFEYAKYVSIEKNLWLVVNLQSRTELGSHILNRDVWANDAVSRTIESHFIVW 564
Query: 289 LLENSYGDDDDEASKVCCFYKLHDQLPAVLVIDPITGQMLAKWSGVIQPETFLVDIEEYS 348
+ DD +E K+ FYK+ P V VI+PITGQ + WSGVI+ E+ + D+ +
Sbjct: 565 QV----YDDTNEGQKISSFYKIEAPPPVVFVINPITGQKMHMWSGVIEAESIVEDLMMFW 620
Query: 349 KSKP 352
+ P
Sbjct: 621 DAGP 624
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 42/131 (32%)
Query: 222 LAEMYRRPRELMHDADFHSTKVHAARQDRWLLLNLQSAGEFASQMHNRDLWADQVIARVV 281
L+ +YR P L F K ++R+D WLL+NL
Sbjct: 108 LSSLYRPPPSLFFHGSFEDAKATSSREDLWLLVNLH------------------------ 143
Query: 282 RESFVFSLLENSYGDDDDEASKVCCFYKLHDQLPAVLVIDPITGQMLAKWSGVIQPETFL 341
E K+ FYK+ P VL+IDPITGQ + WSGVI+P+ FL
Sbjct: 144 ------------------EGQKISTFYKIDSVPPVVLLIDPITGQKMRMWSGVIEPQGFL 185
Query: 342 VDIEEYSKSKP 352
D+ +Y S P
Sbjct: 186 EDLMKYMDSGP 196
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,078,326
Number of extensions: 280062
Number of successful extensions: 736
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 733
Number of HSP's successfully gapped: 3
Length of query: 522
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 419
Effective length of database: 8,282,721
Effective search space: 3470460099
Effective search space used: 3470460099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)