BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0639000 Os02g0639000|AK067293
(940 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G21670.1 | chr4:11511511-11516922 FORWARD LENGTH=968 882 0.0
AT5G01270.2 | chr5:107943-112143 REVERSE LENGTH=775 595 e-170
>AT4G21670.1 | chr4:11511511-11516922 FORWARD LENGTH=968
Length = 967
Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/975 (49%), Positives = 630/975 (64%), Gaps = 57/975 (5%)
Query: 3 RSMVYFGNTSIGEVEVWPS-------GDXXXXXXXXXRE--------IRVDRLSPPSERC 47
R V+ G+ +GE+E++PS D RE IR+ S ERC
Sbjct: 6 RVEVFHGDGRLGELEIYPSRELNQQQDDVMKQRKKKQREVMELAKMGIRISHFSQSGERC 65
Query: 48 QPLAVMHTVAVGARCLVMESRLPKAADEPPQPLVAMHAACLKENKTAVVPLGEEELHLVA 107
PLA++ T++ C +E+ P A E L +++CL++NKTAV+ LG EELHLVA
Sbjct: 66 PPLAILTTISSCGLCFKLEAS-PSPAQES---LSLFYSSCLRDNKTAVMLLGGEELHLVA 121
Query: 108 MTSRRNLTNHACFWGYKVPFGLYNSCLTMLNLRCLGIVFDLDETLIVANTTRSFEDRIDA 167
M S + CFW + V G+Y+SCL MLNLRCLGIVFDLDETL+VANT RSFED+ID
Sbjct: 122 MYSENIKNDRPCFWAFSVAPGIYDSCLVMLNLRCLGIVFDLDETLVVANTMRSFEDKIDG 181
Query: 168 LQRKLSNETDPQRINGMIAEIKRYQDDKSILKQYIEGDQVYDDGKMYKVQPELVPPLSDN 227
QR+++NE DPQR+ ++AE+KRYQDDK++LKQYIE DQV ++G++ KVQ E+VP LSDN
Sbjct: 182 FQRRINNEMDPQRLAVIVAEMKRYQDDKNLLKQYIESDQVVENGEVIKVQSEIVPALSDN 241
Query: 228 HQPMTRPVIRLQEKNIILTRINPLIRDTSVLVRLRPAWEDLRSYLIARGRKRFEVYVCTM 287
HQP+ RP+IRLQEKNIILTRINP+IRDTSVLVR+RP+WE+LRSYL A+GRKRFEVYVCTM
Sbjct: 242 HQPLVRPLIRLQEKNIILTRINPMIRDTSVLVRMRPSWEELRSYLTAKGRKRFEVYVCTM 301
Query: 288 AERDYALEMWRLLDPDSRLINSVQLNDRMVCVKSGLRKSLLNVFHDGSCHPGMALVIDDR 347
AERDYALEMWRLLDP+ LIN+ L R+VCVKSG +KSL NVF DG+CHP MALVIDDR
Sbjct: 302 AERDYALEMWRLLDPEGNLINTNDLLARIVCVKSGFKKSLFNVFLDGTCHPKMALVIDDR 361
Query: 348 LKVWDEKDQSRVHVVPAFTPYYAPQAEANCSIPVLCVARNVACNVRGGFFKDFDEGLLPR 407
LKVWDEKDQ RVHVVPAF PYY+PQAEA + PVLCVARNVAC VRGGFF+DFD+ LLPR
Sbjct: 362 LKVWDEKDQPRVHVVPAFAPYYSPQAEA-AATPVLCVARNVACGVRGGFFRDFDDSLLPR 420
Query: 408 ISNVFYEDEINEIPSAPDVGNYLISEDENVAAVNGNRDPLAFDGMADAEVERRMKE---A 464
I+ + YE++ +IPS PDV +YL+SED + + +NGN+DPL+FDGMAD EVERR+KE A
Sbjct: 421 IAEISYENDAEDIPSPPDVSHYLVSED-DTSGLNGNKDPLSFDGMADTEVERRLKEAISA 479
Query: 465 SGXXXXXXXXXXXXVMPV-LPGQNFXXXXXXXXXXXLGMVPLSNNQGPP--PFTQPVAQL 521
S PV P + + + P PF QP
Sbjct: 480 SSAVLPAANIDPRIAAPVQFPMASASSVSVPVPVQVVQQAIQPSAMAFPSIPFQQPQQPT 539
Query: 522 SL------SDP-LQGSPAREEGEVPESELDPDTRRRLLILQHGQDTRDXXXXXXXXXX-- 572
S+ S+P LQ SPAREEGEVPESELDPDTRRRLLILQHGQDTRD
Sbjct: 540 SIAKHLVPSEPSLQSSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPAPSEPSFPQRP 599
Query: 573 -XXXXXXXXXXHGNWFPVEDGMNPNNLNRG-SAGFPLESETMHYDKKQLPHP-FFHGGEN 629
WFPVE+ M+P + R S +PL+SE +H +K + HP FF +N
Sbjct: 600 PVQAPPSHVQSRNGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHMEKHRPRHPSFFSKIDN 659
Query: 630 PISSDRFSYQNQRYPSQLPHSEDHRVLQNHAPSRYRSFPGEELATRHVSSSQRNNQIVPG 689
SDR ++N+R P + ++ N+ P + F GE+ + SS + +P
Sbjct: 660 STQSDRMLHENRRPPKESLRRDEQLRSNNNLPDSH-PFYGEDASWNQSSSRNSDLDFLPE 718
Query: 690 QHFARHAGSSAGILEEIAMKCGSKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTRKE 749
+ + +SA +L IA+KCG+KVEY+ +L + DL+FS+E W+ +K+GEGIG++R+E
Sbjct: 719 RSVS-ATETSADVLHGIAIKCGAKVEYKPSLVSSTDLRFSVEAWLSNQKIGEGIGKSRRE 777
Query: 750 AQCQAAEISLRNLANKYLSS--DP-----NKMTDMKENGFGSNTNIFGYPGNSRDDV-LP 801
A +AAE S++NLA+ Y+ + DP + EN N N +RD+ LP
Sbjct: 778 ALHKAAEASIQNLADGYMRANGDPGPSHRDATPFTNENISMGNANALNNQPFARDETALP 837
Query: 802 IASTSEETRFVKMGENNSRKAGGSIAALKELCTAEGYNLVFQA-RTSPDSSVGK-EAYAE 859
++S + R S + GSI AL+ELC +EG + FQ+ R P V + E +A+
Sbjct: 838 VSSRPTDPRL-----EGSMRHTGSITALRELCASEGLEMAFQSQRQLPSDMVHRDELHAQ 892
Query: 860 VEVCGQILGNGVGITWEDAKLQAADEALGMLRSMLGPLAQKRSSSPRSLAPSFDKRFKPD 919
VE+ G+++G GVG TW++A++QAA+ AL +RSMLG KR SPRS +KR KPD
Sbjct: 893 VEIDGRVVGEGVGSTWDEARMQAAERALSSVRSMLGQPLHKRQGSPRSFGGMSNKRLKPD 952
Query: 920 FPRAVQRVP-YGRYS 933
F R++QR+P GRYS
Sbjct: 953 FQRSLQRMPSSGRYS 967
>AT5G01270.2 | chr5:107943-112143 REVERSE LENGTH=775
Length = 774
Score = 595 bits (1534), Expect = e-170, Method: Compositional matrix adjust.
Identities = 343/770 (44%), Positives = 457/770 (59%), Gaps = 54/770 (7%)
Query: 3 RSMVYFGNTSIGEVEVWPSGDXXXXXXXXXREIRVDRLSPPSERCQPLAVMHTVAVGARC 62
+S+VY G+ +GE++V EIR+ LSP ERC PLA++ T+A A
Sbjct: 7 KSVVYHGDLRLGELDV-NHVSSSHEFRFPNDEIRIHHLSPAGERCPPLAILQTIASFAVR 65
Query: 63 LVMESRLPKAADEPPQPLVAMHAACLKENKTAVVPLGEEELHLVAMTSRRNLTNHACFWG 122
+ES P + E L+ +HA C E KTAVV LG+EE+HLVAM S+ CFW
Sbjct: 66 CKLESSAPVKSQE----LMHLHAVCFHELKTAVVMLGDEEIHLVAMPSKEK--KFPCFWC 119
Query: 123 YKVPFGLYNSCLTMLNLRCLGIVFDLDETLIVANTTRSFEDRIDALQRKLSNETDPQRIN 182
+ VP GLY+SCL MLN RCL IVFDLDETLIVANT +SFEDRI+AL+ +S E DP RIN
Sbjct: 120 FSVPSGLYDSCLRMLNTRCLSIVFDLDETLIVANTMKSFEDRIEALKSWISREMDPVRIN 179
Query: 183 GMIAEIKRYQDDKSILKQYIEGDQVYDDGKMYKVQPELVPPLSDNHQPMTRPVIRLQEKN 242
GM AE+KRY DD+ +LKQYI+ D +D+G + K QPE V P SD + + RPVIRL EKN
Sbjct: 180 GMSAELKRYMDDRMLLKQYIDNDYAFDNGVLLKAQPEEVRPTSDGQEKVCRPVIRLPEKN 239
Query: 243 IILTRINPLIRDTSVLVRLRPAWEDLRSYLIARGRKRFEVYVCTMAERDYALEMWRLLDP 302
+LTRI P IRDTSVLV+LRPAWE+LRSYL A+ RKRFEVYVCTMAERDYALEMWRLLDP
Sbjct: 240 TVLTRIKPEIRDTSVLVKLRPAWEELRSYLTAKTRKRFEVYVCTMAERDYALEMWRLLDP 299
Query: 303 DSRLINSVQLNDRMVCVKSGLRKSLLNVFHDGSCHPGMALVIDDRLKVWDEKDQSRVHVV 362
++ LI+ +L DR+VCVK +KSLL+VF+ G CHP MA+VIDDR+KVW++KDQ RVHVV
Sbjct: 300 EAHLISLKELRDRIVCVKPDAKKSLLSVFNGGICHPKMAMVIDDRMKVWEDKDQPRVHVV 359
Query: 363 PAFTPYYAPQAEANCSIPVLCVARNVACNVRGGFFKDFDEGLLPRISNVFYEDEINEIPS 422
A+ PYYAPQAE +P LCVARNVACNVRG FFK+FDE L+ IS V+YED++ +P
Sbjct: 360 SAYLPYYAPQAETALVVPHLCVARNVACNVRGYFFKEFDESLMSSISLVYYEDDVENLPP 419
Query: 423 APDVGNYLISEDENVAAVNGNRD-PLAFDGMADAEVERRMKEASGXXXXXXXXXXXXVMP 481
+PDV NY++ ED A+ NGN + P +GM EVERR+ +A+
Sbjct: 420 SPDVSNYVVIEDPGFAS-NGNINAPPINEGMCGGEVERRLNQAAAADHS----------- 467
Query: 482 VLPGQNFXXXXXXXXXXXLGMVPLSNNQGPPPFTQPVAQLSLSDPLQGSPAREEGEVPES 541
LP + + ++P + + P + S L G+P R+ +
Sbjct: 468 TLPATSNAEQKPETPKPQIAVIPNNASTATAAALLPSHKPS----LLGAPRRDGFTFSDG 523
Query: 542 ELDPDTRRRLLILQHGQDTRDXXXXX---XXXXXXXXXXXXXXXHGNWFPVEDGMNPNNL 598
R L+++ G D R+ G W V+D P+
Sbjct: 524 G-------RPLMMRPGVDIRNQNFNQPPILAKIPMQPPSSSMHSPGGWL-VDDENRPSFP 575
Query: 599 NRGSAGFPLESETMHYDKKQLPHPFFHGGENPISSDRFSYQNQRYPSQLPHSEDHRVLQN 658
R S +P Q PH G P+ F++ + ++ +D L+
Sbjct: 576 GRPSGLYP----------SQFPHGT--PGSAPVGP--FAHPSHLRSEEVAMDDD---LKR 618
Query: 659 HAPSRYRSFPGEELATRHVSSSQRNNQIVPGQHFARHAGSSAGILEEIAMKCGSKVEYRS 718
PSR + G ++ H+ S+ R + G+ + L+EI +CGSKVE+R+
Sbjct: 619 QNPSRQTTEGG--ISQNHLVSNGREHHTDGGKSNGGQSHLFVSALQEIGRRCGSKVEFRT 676
Query: 719 ALCDTADLQFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNLANKYLS 768
+ +LQFS+EV GEK+G G+ +T+K+A QAAE +LR+LA KY++
Sbjct: 677 VISTNKELQFSVEVLFTGEKIGIGMAKTKKDAHQQAAENALRSLAEKYVA 726
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,605,081
Number of extensions: 891281
Number of successful extensions: 2092
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2079
Number of HSP's successfully gapped: 4
Length of query: 940
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 832
Effective length of database: 8,145,641
Effective search space: 6777173312
Effective search space used: 6777173312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)