BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0637900 Os02g0637900|AK110708
         (215 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73350.2  | chr1:27575683-27577126 REVERSE LENGTH=211          152   1e-37

>AT1G73350.2 | chr1:27575683-27577126 REVERSE LENGTH=211
          Length = 210

 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/220 (46%), Positives = 125/220 (56%), Gaps = 16/220 (7%)

Query: 1   MSGREVREYTNLSXXXXXXXXXXXXXXXXXXITFQRMVAKMQEVAGERGGYLHGRGALDS 60
           M+GREV+EYTNLS                  +TFQRMVAKMQEVAGERGGYLHGRGALDS
Sbjct: 1   MAGREVKEYTNLSDPKDKKSGKGKIDDED--VTFQRMVAKMQEVAGERGGYLHGRGALDS 58

Query: 61  DDLLYLKEQMXXXXXXXXXXXXXXKRXXXXXXXXXILADSTPA-VPAALRVEPKPKSDIR 119
           DDLLYLKEQM              KR           ADS+PA +P  LRVEPKPKS IR
Sbjct: 59  DDLLYLKEQMEAEEDAERLLRRTEKRAFAAFKKAATQADSSPASIPLPLRVEPKPKSGIR 118

Query: 120 QQDLLKNIVGIKPKRTKVSSPSQPAENDKPKQSPEDSVNKVSSPQSQSGS----RKESSQ 175
           QQDLL+ +V +KPKR K+S+PS P+ +   +     +  KV   + +  +    +K  + 
Sbjct: 119 QQDLLRKVVEVKPKRPKISTPSSPSLSPPVRSDRGPTEAKVHRDKQKEEAMPVLKKPGAD 178

Query: 176 RDGAVSFEKPLLKPVEPRESKPQNATGSLLGLAYESSDEE 215
           R+   + E            + QNA   LLGLAY+SSDEE
Sbjct: 179 RNDGKATES---------NGQGQNAPKGLLGLAYDSSDEE 209



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.306    0.125    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,871,560
Number of extensions: 145208
Number of successful extensions: 635
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 121
Effective length of database: 8,529,465
Effective search space: 1032065265
Effective search space used: 1032065265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 109 (46.6 bits)