BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0622200 Os02g0622200|AK102142
         (296 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34980.1  | chr2:14748967-14749878 FORWARD LENGTH=304          359   1e-99

>AT2G34980.1 | chr2:14748967-14749878 FORWARD LENGTH=304
          Length = 303

 Score =  359 bits (921), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 188/291 (64%), Positives = 207/291 (71%), Gaps = 1/291 (0%)

Query: 7   PKWRKVAYGGRQPGYDDNHTDESFLEEMVMNANVVKRDLLKVMIDSVSISQYLCIVALVV 66
           PKWRKVAYGG Q GYDDN+TDESFLEEMVMNANVV+RDLLKVM DSVSISQYLCIVALVV
Sbjct: 13  PKWRKVAYGGMQIGYDDNYTDESFLEEMVMNANVVRRDLLKVMKDSVSISQYLCIVALVV 72

Query: 67  STWTYTLNLVIDEVTXXXXXXXXXXXXXXXXXXTASPFSLKLLS-KYVLNTSFFISGLYV 125
             W +TL   +DE +                  T        L  +Y++N SFF +GLY+
Sbjct: 73  LVWVHTLESSLDENSLLLLDLSLLASGFLILLLTEEKMLSLSLLLRYLVNISFFTTGLYI 132

Query: 126 LAPIYQTLTRSISSDSIWXXXXXXXXXXXXXXDYSGSTIRPPGALNNPKLTSNISLNASI 185
           LAPIYQTLTRSISSDSIW              DYSGSTIR PGAL  P LTS IS+NASI
Sbjct: 133 LAPIYQTLTRSISSDSIWAVTVSLLLLHLFLHDYSGSTIRAPGALKTPNLTSCISVNASI 192

Query: 186 VASVLVASRLPSRLHVFAIMLFSLQIFLFVPLVAFCIKKFSLRLHLLFSFALMIMTLGVT 245
           VASV VASRLPSRLHVFA+MLFSLQ+FLF PLV +CIKKF+  LHLLFSFALM +TL   
Sbjct: 193 VASVFVASRLPSRLHVFAVMLFSLQVFLFAPLVTYCIKKFNFGLHLLFSFALMGLTLYSI 252

Query: 246 YQLHHMXXXXXXXXXXXXXXVCPYWLIRIQEYKFEINGPWDEAKLCFDITE 296
           Y LH +              VCPYWLIR+QEYKFEINGPWDEAKLCFDIT+
Sbjct: 253 YALHRLFFLVFLSLVLLVNVVCPYWLIRMQEYKFEINGPWDEAKLCFDITD 303



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,997,162
Number of extensions: 156082
Number of successful extensions: 486
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 198
Effective length of database: 8,419,801
Effective search space: 1667120598
Effective search space used: 1667120598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)