BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0621600 Os02g0621600|AK108575
         (156 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04000.1  | chr1:1028415-1028873 REVERSE LENGTH=153             57   5e-09
AT5G44060.1  | chr5:17731209-17731661 FORWARD LENGTH=151           54   4e-08
AT3G23440.1  | chr3:8404358-8404684 REVERSE LENGTH=109             53   7e-08

>AT1G04000.1 | chr1:1028415-1028873 REVERSE LENGTH=153
          Length = 152

 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 81  LMAGYLAHEFLRSGTLLGER-------PESNSKXXXXXXXXXXXXXXXRTRYAEASLLLM 133
           ++AGYL+HE+L  GTL GE+        ES+                 R RY E + LL 
Sbjct: 72  MLAGYLSHEYLTQGTLFGEQWNQARAQAESSKIKPSHTVEPAEECEPKRKRYREVANLLR 131

Query: 134 AGGARVPGVVNPTQLGHWLRI 154
           + GA++PG+VNP QL  +L++
Sbjct: 132 SDGAQLPGIVNPAQLARFLKL 152



>AT5G44060.1 | chr5:17731209-17731661 FORWARD LENGTH=151
          Length = 150

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 12/86 (13%)

Query: 81  LMAGYLAHEFLRSGTLLGE------------RPESNSKXXXXXXXXXXXXXXXRTRYAEA 128
           L+AGYLAHEFL +GTL GE              +S                  R RY E 
Sbjct: 65  LLAGYLAHEFLNNGTLFGELWNPTKAQAGPLTTQSIDPRKNKPSHDIEPSDHKRRRYVEV 124

Query: 129 SLLLMAGGARVPGVVNPTQLGHWLRI 154
           + +L   G  +PG+VNP+QL  +L++
Sbjct: 125 ANILRVDGTHLPGIVNPSQLARFLKL 150



>AT3G23440.1 | chr3:8404358-8404684 REVERSE LENGTH=109
          Length = 108

 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 81  LMAGYLAHEFLRSGTLLGERPESNSKXX----XXXXXXXXXXXXXRTRYAEASLLLMAGG 136
           L+AGY+AHE+L  GT+LG +  S                      R  Y+E + +    G
Sbjct: 31  LLAGYMAHEYLTCGTMLGRKLYSGWAEVGPLVSPSPLQSREVKKARQSYSEVASVFKTDG 90

Query: 137 ARVPGVVNPTQLGHWLRI 154
             VPGVVNPTQL  W+++
Sbjct: 91  NHVPGVVNPTQLAKWIQM 108



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,969,574
Number of extensions: 32407
Number of successful extensions: 58
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 3
Length of query: 156
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 66
Effective length of database: 8,639,129
Effective search space: 570182514
Effective search space used: 570182514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)