BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0621500 Os02g0621500|AK120798
         (408 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24800.1  | chr3:9055653-9057795 FORWARD LENGTH=411            286   2e-77
AT1G18660.4  | chr1:6421433-6425489 FORWARD LENGTH=492             53   2e-07

>AT3G24800.1 | chr3:9055653-9057795 FORWARD LENGTH=411
          Length = 410

 Score =  286 bits (731), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 151/350 (43%), Positives = 216/350 (61%), Gaps = 40/350 (11%)

Query: 41  RFQCCVCLELLYKPVVIACGHMSCFWCVHNAMHIIRESHCAVCRQPYKHFPSICQLLHHL 100
           +F CCVCLELLYKP+V++CGH+SCFWCVH +M+  RESHC +CR PY HFPS+CQ L+ L
Sbjct: 23  QFLCCVCLELLYKPIVLSCGHLSCFWCVHKSMNGFRESHCPICRDPYVHFPSVCQKLYFL 82

Query: 101 LIKLEPVEYKRREKEVLEDEKRVDTYSPQI---IEFLNSKSNNCEIDGENRPEESNSR-- 155
           L K+ P+ +K+RE++VL++E+  + +SPQI   ++      ++  +  + + EE ++   
Sbjct: 83  LKKMYPLAHKKREEQVLKEEQERECFSPQIDLVLDLSVCSGDSLNVSDKQKVEECSNAAN 142

Query: 156 --------------PPQEVTSDGNTINGH----------PKKVKLEDVSCALCKELLYQP 191
                         P  +  +D   +N H           K++  +D+ C+ CKELL +P
Sbjct: 143 LLSSSSSRGDIPCIPKNQEPTDAKALNVHENELLKDNKVSKQISKDDLLCSACKELLVRP 202

Query: 192 AVLNCGHVYCMSCLSSLDDGA--LKCQVCGGLHPGDFPNVCLDLDHFIEDYFPAEYDLRR 249
            VLNCGHVYC  C+  + + +  +KCQ C    P  FP VCL L+  +E+ FP EY+ R 
Sbjct: 203 VVLNCGHVYCEGCVVDMAEESEKIKCQECNVCDPRGFPKVCLILEQLLEENFPEEYNSRS 262

Query: 250 EKIKLLKGECNQGSSSGTSCIKEGRGRPTNKENRAHQDDDL----SDVHIGVGCDSCGMY 305
            K++      ++G+    S +KEG   P+   +  + D  L    S+VH G GCDSCG+Y
Sbjct: 263 SKVQKTLAHNSKGNIQ--SYLKEG---PSLSNDNNNDDPWLANPGSNVHFGAGCDSCGVY 317

Query: 306 PIRGKRYKCKDCTELIGFDLCEECYNTKSKLPGRFNQHHTPDHRMELDHS 355
           PI G RY+CKDC E IG+DLC++CY T SK+PGRFNQ HTPDHR+EL  S
Sbjct: 318 PIIGDRYRCKDCKEEIGYDLCKDCYETPSKVPGRFNQQHTPDHRLELARS 367



>AT1G18660.4 | chr1:6421433-6425489 FORWARD LENGTH=492
          Length = 491

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 5/116 (4%)

Query: 139 NNCEIDGENRPEESNSRPPQEVTSDGNTINGHPKKVKLEDVSCALCKELLYQPAVLNCGH 198
           +  +ID  + P  SN +  ++V  +      H    + +D  C +C +LLY+PA   CGH
Sbjct: 155 SGLQIDPFSGPLRSNLQELEKVMPNSMR-KTHGMAERSDDFDCTVCLKLLYEPATTPCGH 213

Query: 199 VYCMSCLSSLDDGALKCQVCGGLHPGDFPNVC---LDLDHFIEDYFPAEYDLRREK 251
            +C SCL    D   KC +C  +     P  C   + L++ IE  FP EY  R+ +
Sbjct: 214 TFCRSCLFQSMDRGNKCPLCRTVIFMT-PRTCAVSVTLNNIIEKNFPEEYAERKSE 268




 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 42  FQCCVCLELLYKPVVIACGHMSCFWCVHNAMHIIRESHCAVCRQPYKHFPSICQL---LH 98
           F C VCL+LLY+P    CGH  C  C+  +M   R + C +CR      P  C +   L+
Sbjct: 194 FDCTVCLKLLYEPATTPCGHTFCRSCLFQSMD--RGNKCPLCRTVIFMTPRTCAVSVTLN 251

Query: 99  HLLIKLEPVEYKRREKE 115
           +++ K  P EY  R+ E
Sbjct: 252 NIIEKNFPEEYAERKSE 268



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.139    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,816,500
Number of extensions: 457118
Number of successful extensions: 1725
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1728
Number of HSP's successfully gapped: 5
Length of query: 408
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,337,553
Effective search space: 2559628771
Effective search space used: 2559628771
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)