BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0614600 Os02g0614600|AK099971
(790 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G23360.1 | chr2:9949420-9952727 FORWARD LENGTH=899 155 7e-38
AT1G19835.1 | chr1:6856212-6859513 REVERSE LENGTH=983 124 2e-28
AT1G47900.1 | chr1:17647340-17651035 REVERSE LENGTH=1055 104 2e-22
AT4G36120.1 | chr4:17093213-17096573 REVERSE LENGTH=997 96 9e-20
AT3G19370.1 | chr3:6711046-6713494 FORWARD LENGTH=705 69 1e-11
>AT2G23360.1 | chr2:9949420-9952727 FORWARD LENGTH=899
Length = 898
Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 191/742 (25%), Positives = 326/742 (43%), Gaps = 154/742 (20%)
Query: 2 SEMEGALRSCMEQLLIAREEREQIIVEAASEISSE-KKKARELQRXXXXXXXXXXXXXXE 60
S + L+ C++QL REE+E+ + +A ++ S E +++ ++ E
Sbjct: 92 SHTDAGLKECVQQLRFVREEQERRMHDALTKASQEYERRLIVIKTELAGSGKRLAEAEGE 151
Query: 61 NXXXXXXXXXXXXXIGELRESKSASDGELAGARARLDAAQKQAASLQYEVRMLQKELEIR 120
N + +L + + + + L++ +K+ SL+YEVR+L+KELE+R
Sbjct: 152 NAQLSKALLAKNKTVEDLNRERDRIEVDFNSLVSSLESKEKENVSLRYEVRVLEKELELR 211
Query: 121 GQEREYDLQSVDASRRQQAESQKKIALLEGECQRLRAMVRKRLPGPAAIAKMRDEVDQPA 180
+ERE+ ++ +AS + E+ KK+A LE ECQRLR +VRKRLPGPAA++KM +EV+
Sbjct: 212 NEEREFSRRTAEASHKLHLENVKKVAKLESECQRLRVLVRKRLPGPAALSKMSNEVE--- 268
Query: 181 TPRRSRSVAPMSPRSVAPAAPMTPMSTSARPMTPTMSXXXXXXXXXXXXXXXXXXXXXXX 240
M R +P +PM S + T
Sbjct: 269 ----------MLGRRRVNGSPHSPMIDSEKINNLT------------------------- 293
Query: 241 XXXXXXKLRAVEDENKALKQTLAKRDAELQFVQMKYADEACKLSVLQRQLSE-------- 292
+L +E+ENK L++ L K+ +ELQF + Y+ A +L + L E
Sbjct: 294 -----EQLCLLEEENKTLREALNKKVSELQFSRNMYSRTASRLLEFESHLEESSRGTNIE 348
Query: 293 ---------------LTEENKQLSDAHGQTESWASALISELEQFRAAKLQGAA------A 331
+TE + D +SWASAL+SEL+ F+ K G + A
Sbjct: 349 PSRSSNVSHEVSLASVTEFDND--DKVSCADSWASALLSELDNFKNKKEMGTSLVGTPKA 406
Query: 332 SEMSLLDDFAEIERLEMASGGQGLR--SPKNAHSEAISSEKN------------------ 371
+EM L+DDFAE+E+L M + R S S++IS+
Sbjct: 407 AEMKLMDDFAEMEKLAMVASTIDNRPGSSPICSSDSISATGPVENESNENSSEATKTSGT 466
Query: 372 ----DKDTVLENGISISNGQPEWVQDMCKLVMQKHETSGENIDTILEEITRALDQ----- 422
+ D ++ I S+ P+ + + K VM+ + N D +LE+I +AL
Sbjct: 467 VYSLNPDASPKDDIK-SDSLPQSLHIVLKAVMEHKHITQRNTDEVLEDIRKALSSVNHSS 525
Query: 423 -SANNQKGDDLNGSYDWSIMKEMVFSLTEKITSVIGIS--EEGNVA----------SSQK 469
S N+Q+ L + + S+ I + G+S +E +V+ +++
Sbjct: 526 FSTNHQETKTLTVEDRLDMECNISKSIHRIIDVIEGVSLKDERHVSNRESERLSGYTARV 585
Query: 470 LLLDRSEFCARLEHLVHVCHDLLHGKTDLEKFVHEVCLVLEYIINQYKNISFQEQPDTVN 529
L +E + L+ + C+DLL K D++KF E+ VLE+++N S Q+ +
Sbjct: 586 LQWKTTELSSVLQRFLQACYDLLDRKADMKKFAQELSSVLEWMVNHC--FSLQDVSTMRD 643
Query: 530 NNTENLDGEESFGNMNGGCDIKSPKSSSAPDIQTEALEESIQSVEGRKTDHILVNQEESQ 589
+ + +ES +S S DI + + E +T+ + + Q
Sbjct: 644 EIKKQFEWDES-------------RSGSEVDI---GIFRQVSEAEKLRTEDVSFLACKDQ 687
Query: 590 LDEE------LTRVILDQDEKISQENSASCEIESPHDHPSAETLAEKEEKHLXXXXXXXX 643
L E+ L+R ++++ + + +AS S L +E++++
Sbjct: 688 LIEDKPGNQNLSRKTVEEE---ANDKTASA---------SENELKLEEKQNMRTELEIAA 735
Query: 644 XXXKLAECQETITNLSRQLRAL 665
KLAECQETI NL +QL+AL
Sbjct: 736 ASEKLAECQETILNLGKQLKAL 757
>AT1G19835.1 | chr1:6856212-6859513 REVERSE LENGTH=983
Length = 982
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/384 (27%), Positives = 173/384 (45%), Gaps = 57/384 (14%)
Query: 4 MEGALRSCMEQLLIAREEREQIIVEAASEISSEKKKAR-ELQRXXXXXXXXXXXXXXENX 62
++GAL+ CM Q+ +EE EQ + + + +++ R E + EN
Sbjct: 131 LDGALKECMRQIRSLKEENEQKLHDVIATKTNQMDNLRAEFESRIGEYEEELLRCGAEND 190
Query: 63 XXXXXXXXXXXXIGELRESKSASDGELAGARARLDAAQKQAASLQYEVRMLQKELEIRGQ 122
+ + E KS ++ E+ + +++ +++ +L+YE ++ KELEIR +
Sbjct: 191 ALSRSLQERSNMLMRISEEKSQAESEIEHLKNNIESCEREINTLKYETHVITKELEIRNE 250
Query: 123 EREYDLQSVDASRRQQAESQKKIALLEGECQRLRAMVRKRLPGPAAIAKMRDEV------ 176
E+ ++S +A+ +Q E KKIA LE ECQRLR +VRK+LPGPAA+A+M+ EV
Sbjct: 251 EKNMSMRSAEAANKQHLEGVKKIAKLEAECQRLRTLVRKKLPGPAALAQMKMEVESLGFG 310
Query: 177 DQPATPRRSRS-VAPMSPRSVAPAAPMTPMSTSARPMTPTMSXXXXXXXXXXXXXXXXXX 235
D R+ RS V P SP +PM+ MS + M
Sbjct: 311 DHRQDHRQRRSPVRPSSPL----MSPMSHMSQVSEFSLDNM------------------Q 348
Query: 236 XXXXXXXXXXXKLRAVEDENKALKQTLAKRDAELQFVQMKYADEACKLSVLQRQLSELTE 295
+L A+E+E K LK+ LAKR++ELQ + A A +L L+ Q+ +
Sbjct: 349 KFHKENDLLTERLLAMEEETKMLKEALAKRNSELQVSRNLCAKTANRLQTLEAQMMSKSP 408
Query: 296 ENKQL----------------------SDAHGQTESWASALISELEQFRAAKLQGA---- 329
+ D + S A +L+SEL Q K
Sbjct: 409 TKRGFEMPAEIFSRQNASNPPSMASMSEDGNEDARSVAGSLMSELSQSNKDKANAKIKKT 468
Query: 330 -AASEMSLLDDFAEIERLEMASGG 352
+A+++ L+DDF E+E+L G
Sbjct: 469 ESANQLELMDDFLEMEKLACLPNG 492
>AT1G47900.1 | chr1:17647340-17651035 REVERSE LENGTH=1055
Length = 1054
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 168/373 (45%), Gaps = 51/373 (13%)
Query: 4 MEGALRSCMEQLLIAREEREQIIVEAA-SEISSEKKKARELQRXXXXXXXXXXXXXXENX 62
++GAL+ CM Q+ +++ E + + A S+ +K E ++ ++
Sbjct: 181 LDGALKECMRQIRNLKKDHEVKLHDVALSKTKQIEKMTMEFEKRMCDYEQELLRSAADSD 240
Query: 63 XXXXXXXXXXXXIGELRESKSASDGELAGARARLDAAQKQAASLQYEVRMLQKELEIRGQ 122
+ ++ E KS +D E+ ++ L+ +++ SL+YEV ++ KELEIR +
Sbjct: 241 ALSRTLQERSNMLVKVSEEKSRADAEIETLKSNLEMCEREIKSLKYEVHVVSKELEIRNE 300
Query: 123 EREYDLQSVDASRRQQAESQKKIALLEGECQRLRAMVRKRLPGPAAIAKMRDEVDQ---- 178
E+ ++S +++ +Q E KKIA LE ECQRLR++VRK+LPGPAA+A+M+ EV+
Sbjct: 301 EKNMCIRSAESANKQHLEGVKKIAKLEAECQRLRSLVRKKLPGPAALAQMKLEVENLGRD 360
Query: 179 PATPRRSRSVAPMSPRSVAPAAPMTPMSTSARPMTPTMSXXXXXXXXXXXXXXXXXXXXX 238
R+ RS +S +P S++ +
Sbjct: 361 SGDARQKRSPVKVSSPCKSPGG----YSSTGSEFS-----------------LDNAQKFQ 399
Query: 239 XXXXXXXXKLRAVEDENKALKQTLAKRDAELQFVQMKYADEACKLSVLQRQLSELTEENK 298
+L A+E+E K LK+ LAKR++EL + A KL L+ QL + +
Sbjct: 400 KENEFLTERLLAMEEETKMLKEALAKRNSELLESRNLCAQSTSKLQSLEAQLQQNNSQKS 459
Query: 299 QL------------------SDAHGQTESWASAL-------ISELEQFRAAKLQGAAASE 333
L D + + S + +L I + + A + + S
Sbjct: 460 SLEVCPNLNTSNPSSSISVSEDGNDDSGSCSGSLSTNPSQQIKKEKDMAALERVESVNSH 519
Query: 334 MSLLDDFAEIERL 346
+ L+DDF E+E+L
Sbjct: 520 VELMDDFLEMEKL 532
>AT4G36120.1 | chr4:17093213-17096573 REVERSE LENGTH=997
Length = 996
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 92/384 (23%), Positives = 164/384 (42%), Gaps = 66/384 (17%)
Query: 2 SEMEGALRSCMEQLLIAREEREQIIVEAASEISSEKKKAR-ELQRXXXXXXXXXXXXXXE 60
S ++ AL+ C Q+ I +EE ++ + + +S+ K + EL+ +
Sbjct: 139 SHLDDALKECTRQIRIVKEESDKKLQDVILAKTSQWDKIKAELEGKIDELSEGLHRAASD 198
Query: 61 NXXXXXXXXXXXXXIGELRESKSASDGELAGARARLDAAQKQAASLQYEVRMLQKELEIR 120
N I + E +S ++ ++ + L A+K+ + L+Y++ + KE+EIR
Sbjct: 199 NAALTRSLQERSEMIVRISEERSKAEADVEKLKTNLQLAEKEISYLKYDLHVASKEVEIR 258
Query: 121 GQEREYDLQSVDASRRQQAESQKKIALLEGECQRLRAMVRKRLPGPAAIAKMRDEVD--- 177
+E+ L+S D + +Q E KKIA LE EC RLR ++RK+LPGPAA+A+M+ EV+
Sbjct: 259 NEEKNMSLKSADIANKQHLEGVKKIAKLEAECHRLRGLLRKKLPGPAAMAQMKLEVEGLG 318
Query: 178 -QPATPRRSRSVAPMSPRSVAPAAPMTPMSTSARPMTPTMSXXXXXXXXXXXXXXXXXXX 236
+ PR R+++ +A A +ST +
Sbjct: 319 HEFTDPRAQRNMSQNHNAHIAKA----EISTDHK-----------------------LEE 351
Query: 237 XXXXXXXXXXKLRAVEDENKALKQTLAKRDAELQFVQMKYADEACKLSVLQRQLSELTEE 296
+ +E+E + LK+ L+ R+ ELQ + A KL +L+ Q+ +
Sbjct: 352 CKRENVYLTRRTLEMEEEIQTLKEHLSARNNELQVSRNVCAKTLGKLKILEGQMHMFNND 411
Query: 297 -----------NKQLSDAH-------------------GQTESWASALISELEQFRAAKL 326
++ LS H G + A + + R +
Sbjct: 412 KNAPKSNSRNLSESLSSGHDHHYPPSVTSVSEDGFDEEGSSSECGPATSLDSHKVRKVSV 471
Query: 327 QGA----AASEMSLLDDFAEIERL 346
G+ ++S + L+DDF EIE+L
Sbjct: 472 NGSSKPRSSSRLELMDDFLEIEKL 495
>AT3G19370.1 | chr3:6711046-6713494 FORWARD LENGTH=705
Length = 704
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Query: 78 LRESKSASDGELAGARARLDAAQKQAASLQYEVRMLQKELEIRGQEREYDLQSVDASRRQ 137
L+E K + E RLD+ +K+ A L+YE +L+K+L+++ +E E+ +S++ + +Q
Sbjct: 176 LQERKFQVESEFEALMTRLDSTEKENAFLRYEYTVLEKDLQVKTEETEHTRRSMELTHKQ 235
Query: 138 QAESQKKIALLEGECQRLRAMVRKRLPGPAAIAKMRDEVDQPATPRRSRS 187
Q + KI LE ECQRLR + RK+ P + MR+E ++ R R+
Sbjct: 236 QLRNVNKIVELEAECQRLRLLFRKKFPEKS--ISMRNEGEEKKMEMRRRN 283
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.124 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,117,365
Number of extensions: 553517
Number of successful extensions: 2504
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2496
Number of HSP's successfully gapped: 8
Length of query: 790
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 684
Effective length of database: 8,200,473
Effective search space: 5609123532
Effective search space used: 5609123532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 116 (49.3 bits)