BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0613600 Os02g0613600|AK071179
         (135 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80500.1  | chr1:30271195-30272431 FORWARD LENGTH=136          253   3e-68
AT2G20930.1  | chr2:9000790-9001656 REVERSE LENGTH=141             50   3e-07

>AT1G80500.1 | chr1:30271195-30272431 FORWARD LENGTH=136
          Length = 135

 Score =  253 bits (645), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 120/135 (88%), Positives = 126/135 (93%)

Query: 1   MASTACFVIVSKNDIPIYEAEVGSAPKREDQAYQHQFILHAALDVVQDLAWATNTMFLKS 60
           MA+TACF+IV +NDIPIYEAEVGSA KRED A  HQFILHAALDVVQDLAW T+ MFLKS
Sbjct: 1   MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61  VDRFDDLVVSVYVTAGHTRFMLLHDSRSEDGIKSFFQEVHELYIKIFLNPLYLPGSRITS 120
           VDRF+DLVVSVYVTAGHTR MLLHDSR+EDGIKSFFQEVHELYIKI LNPLYLPGSRITS
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNEDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 135
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135



>AT2G20930.1 | chr2:9000790-9001656 REVERSE LENGTH=141
          Length = 140

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 15/139 (10%)

Query: 6   CFVIVSKNDIPIYEAEVGSAPKREDQAYQHQFILHAALDVVQDL-------AWATNTMFL 58
           C  +V   + P+Y      A    D A +   I+H +LDV+++            N  FL
Sbjct: 4   CVAVVGHQNNPLYIQSFTDA----DDALKLHHIVHCSLDVIEERVNNPKKSGTTLNEAFL 59

Query: 59  KSVDRFDDLVVSVYVTAGHTRFMLLH---DSRSEDGIKSFFQEVHELYIKIFLNPLYLPG 115
             +    +  V  Y+T    +F+L+    D R  D ++SFF++ H  Y+    NP ++PG
Sbjct: 60  GLLYPTVNYKVYGYLTNTKVKFILVTTDLDVRDTD-VRSFFRKFHAAYVDAVSNPFHVPG 118

Query: 116 SRITSSHFDTKVRALARKY 134
            +ITS  F   V  +   Y
Sbjct: 119 KKITSRTFAQTVSNIVGSY 137



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,725,262
Number of extensions: 100010
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 2
Length of query: 135
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 47
Effective length of database: 8,693,961
Effective search space: 408616167
Effective search space used: 408616167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 106 (45.4 bits)