BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0610600 Os02g0610600|AK099572
(200 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G23860.1 | chr1:8428091-8429164 REVERSE LENGTH=188 106 8e-24
AT2G24590.1 | chr2:10449837-10450860 FORWARD LENGTH=197 105 1e-23
AT4G31580.1 | chr4:15306983-15308064 FORWARD LENGTH=201 103 5e-23
>AT1G23860.1 | chr1:8428091-8429164 REVERSE LENGTH=188
Length = 187
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGXXXXXXXXXXXXXXXXXXXXG 60
M RVYVGNLDPRVT RE+EDEF+ FGVLR+VWVAR+PPG
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60
Query: 61 KNGWRVELSTKAXXXXXXXXXXXXXM---KCYECGEPGHFAREC 101
KNGWRVELS K + KCYECGE GHFAREC
Sbjct: 61 KNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
>AT2G24590.1 | chr2:10449837-10450860 FORWARD LENGTH=197
Length = 196
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGXXXXXXXXXXXXXXXXXXXXG 60
M+RVYVGNLDPRVT RE+EDEFR FGV+RSVWVAR+PPG G
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
Query: 61 KNGWRVELS----------TKAXXXXXXXXXXXXXMKCYECGEPGHFAREC 101
KNGWRVE S +KCYECGE GHFAREC
Sbjct: 61 KNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFAREC 111
>AT4G31580.1 | chr4:15306983-15308064 FORWARD LENGTH=201
Length = 200
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 62/114 (54%), Gaps = 13/114 (11%)
Query: 1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGXXXXXXXXXXXXXXXXXXXXG 60
M+RVYVGNLDPRVT RE+EDEFR FGV+RSVWVAR+PPG G
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
Query: 61 KNGWRVELS-------------TKAXXXXXXXXXXXXXMKCYECGEPGHFAREC 101
KNGWRVE S + +KCYECGE GHFAREC
Sbjct: 61 KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFAREC 114
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,873,476
Number of extensions: 34793
Number of successful extensions: 229
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 3
Length of query: 200
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 106
Effective length of database: 8,529,465
Effective search space: 904123290
Effective search space used: 904123290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)