BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0609400 Os02g0609400|AK061315
         (158 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48335.1  | chr5:19588083-19589366 FORWARD LENGTH=115           64   4e-11
AT3G07580.2  | chr3:2421177-2422761 REVERSE LENGTH=159             62   9e-11

>AT5G48335.1 | chr5:19588083-19589366 FORWARD LENGTH=115
          Length = 114

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 20/106 (18%)

Query: 10  KRYTPPVHRNRANNRRKSGDRAEKASYLYNNDGEKSHAPSLKNLPPIIPHETFFSNPQND 69
           KRYTPP      N R +S +R       ++N+GE S + ++                Q +
Sbjct: 18  KRYTPP------NQRNRSSNRRRSRGSFHSNEGESSQSVAVGF--------------QRE 57

Query: 70  YSQTRLIPLEGCCASEAAQLLNDRWAAAMNLYNDQSYDSPDKPVMY 115
            S  ++I +EGC  SEA QLL+DRW AAM+LYND S D  ++P+MY
Sbjct: 58  NSSPKIISVEGCSRSEAFQLLSDRWTAAMHLYNDPSVDLSERPMMY 103



>AT3G07580.2 | chr3:2421177-2422761 REVERSE LENGTH=159
          Length = 158

 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 59/121 (48%), Gaps = 23/121 (19%)

Query: 15  PVHRNRANNRRKSGDRAEKASYLYNNDGEKSHAPSLKNLPPIIPHETFFSNPQNDYSQT- 73
           P HR  + NRRKSGDR        NND E+       N PP    +        + SQT 
Sbjct: 29  PCHRKASGNRRKSGDRTSSQQ---NNDNER-------NQPPATGLQ------MENISQTQ 72

Query: 74  RLIPLEGCCASEAAQLLNDRWAAAMNLYNDQSYDSPDKPVMYXXXXXXXXXXXXMKLPHQ 133
           R+I ++ C  S A QL++ RWAA M+ Y+D + D   +P+MY             KLPHQ
Sbjct: 73  RIITIKDCSRSAAYQLMSQRWAAEMHQYDDPTVDLSVRPIMYYGGSVWG------KLPHQ 126

Query: 134 M 134
           +
Sbjct: 127 I 127



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.130    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,666,919
Number of extensions: 138578
Number of successful extensions: 226
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 2
Length of query: 158
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 68
Effective length of database: 8,639,129
Effective search space: 587460772
Effective search space used: 587460772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 107 (45.8 bits)