BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0609200 Os02g0609200|Os02g0609200
         (78 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00860.1  | chr4:359548-359868 REVERSE LENGTH=81                99   4e-22
AT1G01170.1  | chr1:74105-74443 REVERSE LENGTH=84                  98   9e-22

>AT4G00860.1 | chr4:359548-359868 REVERSE LENGTH=81
          Length = 80

 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 54/72 (75%)

Query: 5  YIIGSVAASFAFAYVCEIYIAEGKLLGGTTTRTMATDEWGKETDKKFQAWPRTAGPPVVM 64
          YIIG++A S   AYVC+  I++ KL GGTT  T+   EWG  T+++ QAWPR AGPPVVM
Sbjct: 6  YIIGALAGSAVVAYVCDKVISDDKLFGGTTPGTITNKEWGAATEERLQAWPRVAGPPVVM 65

Query: 65 NPVRRQNFIVKS 76
          NP+ RQNFIVKS
Sbjct: 66 NPISRQNFIVKS 77



>AT1G01170.1 | chr1:74105-74443 REVERSE LENGTH=84
          Length = 83

 Score = 97.8 bits (242), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 56/73 (76%)

Query: 4  KYIIGSVAASFAFAYVCEIYIAEGKLLGGTTTRTMATDEWGKETDKKFQAWPRTAGPPVV 63
          KYIIG++  SF  +Y+ +  I++ K+ GGTT  T++  EW   TD+KFQAWPRTAGPPVV
Sbjct: 8  KYIIGALIGSFGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPVV 67

Query: 64 MNPVRRQNFIVKS 76
          MNP+ RQNFIVK+
Sbjct: 68 MNPISRQNFIVKT 80



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.131    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,615,220
Number of extensions: 52547
Number of successful extensions: 132
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 2
Length of query: 78
Length of database: 11,106,569
Length adjustment: 50
Effective length of query: 28
Effective length of database: 9,735,769
Effective search space: 272601532
Effective search space used: 272601532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)