BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0606100 Os02g0606100|009-178-B11
         (138 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73180.1  | chr1:27518335-27521432 FORWARD LENGTH=514          107   2e-24

>AT1G73180.1 | chr1:27518335-27521432 FORWARD LENGTH=514
          Length = 513

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 74/111 (66%), Gaps = 6/111 (5%)

Query: 3   GIKIFDHNGSLQFKKMFEKLYQADWKPEAPEKFSDIADLTISLGSIKIEETKKQVXXXXX 62
           G+KIF+++G   +KKMFE+LYQA+WKPE+PE+F DI++L  S+ S+K+ E K Q      
Sbjct: 385 GMKIFNYDGKRYYKKMFERLYQAEWKPESPERFGDISELIKSVESLKLGEGKSQ----GQ 440

Query: 63  XXXXXXXXXXXNIAAKPTAYRPPHSKNSADVQDKLFGGLASTGGEMSKNAL 113
                       IA KP AYRPPH+K++A VQ +L G   ST GEMSKNAL
Sbjct: 441 GSAQKKTIAPNPIAQKPAAYRPPHAKHAAAVQAELLG--ISTTGEMSKNAL 489



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.129    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,205,252
Number of extensions: 61108
Number of successful extensions: 86
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 50
Effective length of database: 8,693,961
Effective search space: 434698050
Effective search space used: 434698050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 106 (45.4 bits)