BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0605600 Os02g0605600|AK066104
(418 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G17440.1 | chr5:5749849-5753415 FORWARD LENGTH=405 432 e-121
AT3G03340.1 | chr3:786439-789762 FORWARD LENGTH=403 421 e-118
AT5G51410.1 | chr5:20881821-20883577 REVERSE LENGTH=335 81 1e-15
>AT5G17440.1 | chr5:5749849-5753415 FORWARD LENGTH=405
Length = 404
Score = 432 bits (1112), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/321 (68%), Positives = 255/321 (79%), Gaps = 5/321 (1%)
Query: 1 MDAIRKQLDQLMGANRNGDVREVSRKYYDRDVCRLFLAGLCPHDLFQLTKMDMGPCPKMH 60
MDA+RKQLD LMGANRNGDV EV+RKYYDRDVCRL+L+GLCPH+LFQLTKMDMGPCPK+H
Sbjct: 1 MDAMRKQLDVLMGANRNGDVTEVNRKYYDRDVCRLYLSGLCPHELFQLTKMDMGPCPKVH 60
Query: 61 SLQLRKEYEEAKAKGMDNYDRELEETIERLISECERKIQRALKRLEEDDAKAAIAISITE 120
SLQLRKEY++AKAKG+DNYDRELE+ I+RLI EC+RKI RAL RL+E+DAKAAIAIS+TE
Sbjct: 61 SLQLRKEYKDAKAKGVDNYDRELEDAIDRLIVECDRKIGRALNRLQEEDAKAAIAISVTE 120
Query: 121 VTQSKEVIEFSKQIKEKMKEIDAFDLEGNTEGKIRATEEVDKLKEQRAEEQAKHLLEAFN 180
TQS E++E SKQIKEKMKE D DLEG T+ KIRA E V++++ +RA+ QA LL+AFN
Sbjct: 121 FTQSPEILELSKQIKEKMKEADLHDLEGKTDLKIRALELVEEMRTKRADLQAVLLLDAFN 180
Query: 181 KDRVSLMTSLQTANQSIXXXXXXXXXXXRTQEMIDEKLKKAEELGENGMIXXXXXXXXXX 240
KDR TSLQ A + RTQEMI+EKLKKAEELGE GM+
Sbjct: 181 KDR----TSLQQAVPAQQPAATLPPPDPRTQEMINEKLKKAEELGEQGMVDEAQKALEEA 236
Query: 241 XXXXXXGARPQPVPDSAKMS-THVQITDQKLRLCDICGAFLSVYDSDRRLADHFGGKLHM 299
AR +PV DS K + V+ITDQKLRLCDICGAFLSVYDSDRRLADHFGGKLH+
Sbjct: 237 EALKKLTARQEPVVDSTKYTAADVRITDQKLRLCDICGAFLSVYDSDRRLADHFGGKLHL 296
Query: 300 GYMLIREKLSELQEEKNKRRK 320
GYMLIR+KL+ELQEEKNK K
Sbjct: 297 GYMLIRDKLAELQEEKNKVHK 317
>AT3G03340.1 | chr3:786439-789762 FORWARD LENGTH=403
Length = 402
Score = 421 bits (1081), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/321 (66%), Positives = 251/321 (78%), Gaps = 5/321 (1%)
Query: 1 MDAIRKQLDQLMGANRNGDVREVSRKYYDRDVCRLFLAGLCPHDLFQLTKMDMGPCPKMH 60
MDAIRKQLD LMGANRNGDV+EV+RKYYDRDVCRL+L+GLCPHDLFQLTKMDMGPCPK+H
Sbjct: 1 MDAIRKQLDVLMGANRNGDVQEVNRKYYDRDVCRLYLSGLCPHDLFQLTKMDMGPCPKVH 60
Query: 61 SLQLRKEYEEAKAKGMDNYDRELEETIERLISECERKIQRALKRLEEDDAKAAIAISITE 120
SLQLRKEY EA+AKG+DNYDRELE+ I+RLI EC+RKI RALKRL+E+DAKAAIAIS++E
Sbjct: 61 SLQLRKEYREARAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLQEEDAKAAIAISVSE 120
Query: 121 VTQSKEVIEFSKQIKEKMKEIDAFDLEGNTEGKIRATEEVDKLKEQRAEEQAKHLLEAFN 180
VTQS E++E S++IKEKMKE D DLEG + KIRA E V++++ +RA++QA LLEAFN
Sbjct: 121 VTQSPEILELSEKIKEKMKEADIHDLEGKMDLKIRALELVEEMRTKRADQQAVLLLEAFN 180
Query: 181 KDRVSLMTSLQTANQSIXXXXXXXXXXXRTQEMIDEKLKKAEELGENGMIXXXXXXXXXX 240
KDR SL + S RTQEMI+EKLKKAE+LGE GM+
Sbjct: 181 KDRASLPQPVPAQPPS----SELPPPDPRTQEMINEKLKKAEDLGEQGMVDEAQKALEEA 236
Query: 241 XXXXXXGARPQPVPDSAKMS-THVQITDQKLRLCDICGAFLSVYDSDRRLADHFGGKLHM 299
R +P DS K + V+ITDQKLRLCDICGAFLSVYDSDRRLADHFGGKLH+
Sbjct: 237 EALKKLTVRREPPADSTKYTAVDVRITDQKLRLCDICGAFLSVYDSDRRLADHFGGKLHL 296
Query: 300 GYMLIREKLSELQEEKNKRRK 320
GYML+R+KL+EL +EK RK
Sbjct: 297 GYMLVRDKLTELLDEKANIRK 317
>AT5G51410.1 | chr5:20881821-20883577 REVERSE LENGTH=335
Length = 334
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 12/159 (7%)
Query: 1 MDAIRKQLDQLMGANRN------GDVREVSRKYYDRDVCRLFLAGLCPHDLFQLTKMDMG 54
MDA R LD+LMGA RN +EV K+ DR+VC ++ CPHDLF TK D+G
Sbjct: 1 MDAQRALLDELMGAARNLTDEERRGFKEV--KWDDREVCAFYMVRFCPHDLFVNTKSDLG 58
Query: 55 PCPKMHSLQLRKEYEEAKAKG--MDNYDRELEETIERLISECERKIQRALKRLEEDDAKA 112
C ++H +L++ +E + + ++ EL + E+L+++ +RK++R +RL ++
Sbjct: 59 ACSRIHDPKLKESFENSPRHDSYVPKFEAELAQFCEKLVNDLDRKVRRGRERLAQEVEPV 118
Query: 113 AIAISITEVTQSKEVIEFSKQIKEKMKEIDAFDLEGNTE 151
E + V+E +++K +++++A EG +
Sbjct: 119 PPPSLSAEKAEQLSVLE--EKVKNLLEQVEALGEEGKVD 155
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 38/57 (66%)
Query: 267 DQKLRLCDICGAFLSVYDSDRRLADHFGGKLHMGYMLIREKLSELQEEKNKRRKIDR 323
++K+ LC++CG+FL D+ R H GK H+GY L+R+ ++E + K+K ++ +R
Sbjct: 188 EKKMALCEVCGSFLVANDAVERTQSHVTGKQHVGYGLVRDFIAEQKAAKDKGKEEER 244
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,136,301
Number of extensions: 234754
Number of successful extensions: 1357
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1356
Number of HSP's successfully gapped: 4
Length of query: 418
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 317
Effective length of database: 8,337,553
Effective search space: 2643004301
Effective search space used: 2643004301
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)