BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0598300 Os02g0598300|AK105842
         (307 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G24460.1  | chr1:8666072-8672338 FORWARD LENGTH=1808           137   1e-32
AT4G31570.1  | chr4:15297061-15306036 FORWARD LENGTH=2731          55   5e-08

>AT1G24460.1 | chr1:8666072-8672338 FORWARD LENGTH=1808
          Length = 1807

 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 167/306 (54%), Gaps = 32/306 (10%)

Query: 1   MSEASFPEDLLSLEMADRLEWLVEQKKIADMIFSEHRKVKDILASTDLPHAVLTGELDSQ 60
           +S    PE+  S ++ +++  L E++K    +  E+ ++KD++ S DLP  +    L+S+
Sbjct: 475 LSNIYTPEEGHSFDIVEKVRSLAEERKELTNVSQEYNRLKDLIVSIDLPEEMSQSSLESR 534

Query: 61  IHWLLNSLYQAKEDAARMQDESSAMLHKLASHESKLNSMHEEVDRLTIAL--LEEKQEKD 118
           + WL  S  Q K++   +Q+   ++   L++   + +++ +E+D L+ +L  +EE  E+ 
Sbjct: 535 LAWLRESFLQGKDEVNALQNRIESVSMSLSAEMEEKSNIRKELDDLSFSLKKMEETAERG 594

Query: 119 ILANEHAELMSLYHAASDQLSVVSSRYTELVKAFAEVSDVQ---LEDHEILDGGKLVEQC 175
            L  E                       E+V+   E S +    +EDH   D   LV++ 
Sbjct: 595 SLERE-----------------------EIVRRLVETSGLMTEGVEDHTSSDINLLVDRS 631

Query: 176 LANIQGRAK----SSPVECESFEKLQTQVYTLDQELTLCKIILEEDKADRSEMMRLSGEL 231
              I+ + +    SS    E FE  Q+ +Y  D E +LCK +L E +    ++  LS EL
Sbjct: 632 FDKIEKQIRDSSDSSYGNEEIFEAFQSLLYVRDLEFSLCKEMLGEGELISFQVSNLSDEL 691

Query: 232 QRMVQETDALKNEKDSLQKELERVEEKSSLLREKLSMAVKKGKGLVQEREGLKQVLDEKK 291
           +   QE   +K EK +L+K+LER EEKS+LLR+KLSMA+KKGKGLVQ+RE  K  LDEKK
Sbjct: 692 KIASQELAFVKEEKIALEKDLERSEEKSALLRDKLSMAIKKGKGLVQDREKFKTQLDEKK 751

Query: 292 SDIEKL 297
           S+IEKL
Sbjct: 752 SEIEKL 757



>AT4G31570.1 | chr4:15297061-15306036 FORWARD LENGTH=2731
          Length = 2730

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 50/67 (74%)

Query: 232  QRMVQETDALKNEKDSLQKELERVEEKSSLLREKLSMAVKKGKGLVQEREGLKQVLDEKK 291
            Q +V E +AL  +   LQ+ L++ E+KS+ +REKL++AV+KGK LVQ+R+ LKQ ++E  
Sbjct: 1831 QSLVAENEALDKKIIELQEFLKQEEQKSASVREKLNVAVRKGKALVQQRDSLKQTIEEVN 1890

Query: 292  SDIEKLK 298
            +++ +LK
Sbjct: 1891 AELGRLK 1897



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.127    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,063,774
Number of extensions: 245980
Number of successful extensions: 2234
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 2260
Number of HSP's successfully gapped: 27
Length of query: 307
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 209
Effective length of database: 8,419,801
Effective search space: 1759738409
Effective search space used: 1759738409
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 111 (47.4 bits)