BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0597700 Os02g0597700|Os02g0597700
(168 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G14360.1 | chr5:4631038-4631641 FORWARD LENGTH=164 148 2e-36
AT5G40630.1 | chr5:16271402-16272429 REVERSE LENGTH=166 123 5e-29
AT5G52060.1 | chr5:21152449-21153741 REVERSE LENGTH=343 83 8e-17
AT3G51780.1 | chr3:19207029-19208178 REVERSE LENGTH=270 81 2e-16
AT5G07220.1 | chr5:2265545-2266720 REVERSE LENGTH=304 81 3e-16
AT5G62100.1 | chr5:24940477-24941775 FORWARD LENGTH=297 79 8e-16
>AT5G14360.1 | chr5:4631038-4631641 FORWARD LENGTH=164
Length = 163
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/103 (68%), Positives = 88/103 (85%)
Query: 46 EIGWEVRPGGMLVQKREGRGGEEVILVRVSTGFAWHDVSIAATSTFGELKVRLSMVTGLE 105
EI WE+RPGGMLVQKR+ GE++I +RVST +HD+SI ATSTFGELK+ LS++TGLE
Sbjct: 46 EIKWELRPGGMLVQKRQESIGEDLISIRVSTFAHFHDLSIEATSTFGELKMVLSLLTGLE 105
Query: 106 PREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDPALKDMKV 148
P++QRL+F+GKERED ++LHMVGV DKDKVLLLEDP KD K+
Sbjct: 106 PKQQRLVFKGKEREDHEYLHMVGVGDKDKVLLLEDPGFKDKKL 148
>AT5G40630.1 | chr5:16271402-16272429 REVERSE LENGTH=166
Length = 165
Score = 123 bits (308), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 82/104 (78%), Gaps = 2/104 (1%)
Query: 46 EIGWEVRPGGMLVQKR-EGRGGEEVILVRVST-GFAWHDVSIAATSTFGELKVRLSMVTG 103
I WE+RPGGMLVQKR E E++I +RVST +++SI A STFGELK+ +++V+G
Sbjct: 54 NIKWEMRPGGMLVQKRSEDSNTEDLISLRVSTVSQLSYEISIDANSTFGELKMMIAIVSG 113
Query: 104 LEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDPALKDMK 147
+E +EQRLLFRGKERED ++LHM+GV D DKV LL+DPA K++K
Sbjct: 114 IEAKEQRLLFRGKEREDREYLHMIGVGDGDKVFLLQDPAFKELK 157
>AT5G52060.1 | chr5:21152449-21153741 REVERSE LENGTH=343
Length = 342
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 64/98 (65%), Gaps = 6/98 (6%)
Query: 50 EVRPGGMLVQKREGRGGEE------VILVRVSTGFAWHDVSIAATSTFGELKVRLSMVTG 103
E+RPGGMLVQKR +I VR+ G +H+++I+ ++FGELK L+ TG
Sbjct: 41 EIRPGGMLVQKRNPDLDPVGPPPPPMIRVRIKYGAVYHEINISPQASFGELKKMLTGPTG 100
Query: 104 LEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDP 141
+ ++Q+L+++ KER+ L + GV+DK K++L+EDP
Sbjct: 101 IHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDP 138
>AT3G51780.1 | chr3:19207029-19208178 REVERSE LENGTH=270
Length = 269
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 64/112 (57%), Gaps = 17/112 (15%)
Query: 46 EIGWEVRPGGMLVQKREGRGGEE----------------VILVRVSTGFAWHDVSIAATS 89
E WEVRPGGMLVQ+R+ + I + VS G + HD+ I+A +
Sbjct: 8 ESEWEVRPGGMLVQRRDDAASSDHKPLQDPDSASAAFAQTIRITVSHGSSHHDLHISAHA 67
Query: 90 TFGELKVRLSMVTGLEPREQRLLFRGKEREDTDHLHMVGVRDKDK-VLLLED 140
TFG++K L TGLE E ++LFRG ER+D + L GV+D K V+++ED
Sbjct: 68 TFGDVKKALVQKTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVVVED 119
>AT5G07220.1 | chr5:2265545-2266720 REVERSE LENGTH=304
Length = 303
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 2/95 (2%)
Query: 49 WEVRPGGMLVQKREGRGGE--EVILVRVSTGFAWHDVSIAATSTFGELKVRLSMVTGLEP 106
WE RPGGM+VQ+R + + V VRV G +H+++I + S+FGELK LS GL
Sbjct: 22 WESRPGGMVVQRRTDQNSDVPRVFRVRVKYGSVYHEININSQSSFGELKKMLSDQVGLHH 81
Query: 107 REQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDP 141
+ ++L++ KER+ L + GV+D+ K+++ EDP
Sbjct: 82 EDMKVLYKDKERDSKMFLDLCGVKDRSKLVVKEDP 116
>AT5G62100.1 | chr5:24940477-24941775 FORWARD LENGTH=297
Length = 296
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
Query: 50 EVRPGGMLVQKREGRGGE--EVILVRVSTGFAWHDVSIAATSTFGELKVRLSMVTGLEPR 107
E+RPGGM+VQKR I VRV G H++SI + STFGELK LS TG+ +
Sbjct: 17 ELRPGGMVVQKRTDHSSSVPRGIRVRVKYGSVHHEISINSQSTFGELKKILSGATGVHHQ 76
Query: 108 EQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDP 141
+ +++++ KER+ L + GV+D+ K++L+EDP
Sbjct: 77 DMQIIYKDKERDSKMFLDLSGVKDRSKLILIEDP 110
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,950,530
Number of extensions: 99707
Number of successful extensions: 305
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 6
Length of query: 168
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 77
Effective length of database: 8,611,713
Effective search space: 663101901
Effective search space used: 663101901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)