BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0596000 Os02g0596000|AK072766
(292 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G24750.1 | chr4:12758422-12760749 REVERSE LENGTH=293 297 5e-81
AT3G08920.1 | chr3:2712274-2713117 FORWARD LENGTH=215 93 2e-19
AT2G42220.1 | chr2:17592105-17593305 FORWARD LENGTH=235 76 2e-14
AT4G27700.1 | chr4:13826541-13827673 REVERSE LENGTH=225 52 4e-07
>AT4G24750.1 | chr4:12758422-12760749 REVERSE LENGTH=293
Length = 292
Score = 297 bits (760), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 136/224 (60%), Positives = 173/224 (77%)
Query: 67 KLAKEMAAARRRWETLIREQKIKTLTPREAGYTFKLTDKVLLDVRPSNERQKAWVKGSTW 126
K +++AAA++RW+ L+RE K+K LTPREAGY L++K LLDVRPS+ER KAW+KGSTW
Sbjct: 67 KQMRDIAAAKKRWDGLLREGKVKLLTPREAGYAISLSNKPLLDVRPSSERNKAWIKGSTW 126
Query: 127 IPVFDVDTSFDLGGAGKKFTNYVMGGWWSGSSTMTVNKNFVQQVEEKFSKDTDIIVVCQK 186
+P+FD D + D G KK T++ MGGWWSG+ T++ N+ F+ +VEEKF KD+++IV CQK
Sbjct: 127 VPIFDNDDNLDAGTLSKKVTSFAMGGWWSGAPTLSFNRLFLSKVEEKFPKDSELIVACQK 186
Query: 187 GLRSLAACEQLYGAGFQNLFWVQGGLXXXXXXXXXXXGPQPFKLAGIGGVSEFFGWTDQQ 246
GLRSLAACE LY AG++NLFWVQGGL G QP KLAGIGG SEF GWTDQQ
Sbjct: 187 GLRSLAACELLYNAGYENLFWVQGGLESAQDEDLVTEGVQPLKLAGIGGFSEFLGWTDQQ 246
Query: 247 RAQAVKEGLGYRLIFTGRLVGALVLVDALFLGAQRIGPLLQELQ 290
RAQA KEG GYRL++T RL G ++ DALF+GAQ++G +QEL+
Sbjct: 247 RAQAAKEGWGYRLVYTARLFGVVLAADALFVGAQQLGHYIQELR 290
>AT3G08920.1 | chr3:2712274-2713117 FORWARD LENGTH=215
Length = 214
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 82 LIREQKIKTLTPREAGYTFKLTDKVLLDVRPSNERQKAWVKGSTWIPVFDVDTSFDLGGA 141
LI K++ + P+EA +LLDVRP+ ER+KA VKGS +P+F D
Sbjct: 39 LILSGKVRAVEPKEANAVVASEGYILLDVRPAWEREKARVKGSLHVPLFVEDPDNGPITL 98
Query: 142 GKKFTNYVMGGWWSGSSTMTVNKNFVQQVEEKF-SKDTDIIVVCQKGLRSLAACEQLYGA 200
KK+ + G W+G +N F +V E K++ ++VVC +GLRSLAA +L+G
Sbjct: 99 LKKWIHLGYIGLWTGQRFTMINDEFALRVVEAVPDKESKVLVVCGEGLRSLAAVSKLHGE 158
Query: 201 GFQNLFWVQGGLXXXXX-XXXXXXGPQPFKLAGIGGVS 237
G+++L W+ GG G + + A IGGVS
Sbjct: 159 GYKSLGWLTGGFNRVSEGDFPEIEGTEELRFATIGGVS 196
>AT2G42220.1 | chr2:17592105-17593305 FORWARD LENGTH=235
Length = 234
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 95 EAGYTFKLTDKVLLDVRPSNERQKAWVKGSTWIPVFDVDTSFDLGGAGKKFTNYVMGGWW 154
E GY+ ++DVR + ++A +K + IP+F + D+G K+ + G +
Sbjct: 63 EEGYS-------VVDVRDKTQFERAHIKSCSHIPLFIYNEDNDIGTIIKRTVHNNFSGLF 115
Query: 155 SGSSTMTVNKNFVQQVEEKFSKDTDIIVVCQKGLRSLAACEQLYGAGFQNLFWVQGGLXX 214
G VN F++ V +FS+D+ +++VCQ+GLRS AA +L AG++N+ V GL
Sbjct: 116 FGLPFTKVNPEFLKSVRNEFSQDSKLLLVCQEGLRSAAAASRLEEAGYENIACVTSGLQS 175
Query: 215 XXXXXXXXXGPQPFKLAGIGGV 236
G + AG G+
Sbjct: 176 VKPGTFESVGSTELQNAGKAGL 197
>AT4G27700.1 | chr4:13826541-13827673 REVERSE LENGTH=225
Length = 224
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 24/153 (15%)
Query: 77 RRWETLIREQKIKTLTPREAGYTFKLTDKVLLDVRPSNERQKAWVKGSTWIPVFDVD--- 133
R+ L+ E++++++ +EA K + V+LDVRP E + G+ + ++ +
Sbjct: 63 RQKRELLLEKRVRSVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVEMYRLIREW 122
Query: 134 TSFDLGGAGKKFTNYVMGGWWSGSSTMTVNKNFVQQVEEKFSKDTDIIVVCQKG------ 187
T++D+ + + G +SG+ N F+Q VE K K+ IIV C
Sbjct: 123 TAWDIA----RRLGFAFFGIFSGTEE---NPEFIQSVEAKLDKEAKIIVACSSAGTMKPT 175
Query: 188 --------LRSLAACEQLYGAGFQNLFWVQGGL 212
RSL A L G++N+F ++GG+
Sbjct: 176 QNLPEGQQSRSLIAAYLLVLNGYKNVFHLEGGI 208
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,940,605
Number of extensions: 189624
Number of successful extensions: 396
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 4
Length of query: 292
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 194
Effective length of database: 8,419,801
Effective search space: 1633441394
Effective search space used: 1633441394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)