BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0591900 Os02g0591900|AK060750
         (379 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32850.2  | chr2:13935448-13937977 REVERSE LENGTH=671          171   7e-43

>AT2G32850.2 | chr2:13935448-13937977 REVERSE LENGTH=671
          Length = 670

 Score =  171 bits (433), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 152/418 (36%), Positives = 209/418 (50%), Gaps = 76/418 (18%)

Query: 1   VWFRVNELLPLELQKNLPDGASSGISMSLQDEGAYKRTHVMXXXXXXXXXIEQSNSSLSH 60
           +WFRVNE LP  LQK+LPD         +Q  G +  +                    S 
Sbjct: 290 IWFRVNEQLPANLQKSLPDRPPE-----MQSTGVHDGSSKSATKPSPAPRRSPPPPPPSS 344

Query: 61  GSSKAGDAPLGAFWATQHAQGSQVA-DNRNSLFDEEPIKPSPSSKHNQSRGDISISAPGD 119
           G S +G  PLGAFWATQHA+ S V+ DN+N    +EP   S +SK  + R D        
Sbjct: 345 GESDSG-GPLGAFWATQHAKTSVVSEDNKNMPKFDEP--NSNTSKSERVRVD-------- 393

Query: 120 RHGRSGQAVRGTPSNSVSNNGLASGANTNLFMESQSSLKTKESQPK--------SEKDPF 171
               S Q  + +P       G A G   N  +E+  ++  K + P         S+ D F
Sbjct: 394 ----SHQPKKPSPVR-----GEARGIQRNKDLET--TISQKNTTPAAANNMTRVSKDDAF 442

Query: 172 NSFVADFEANNLHSGTNVASKESELEAEVSNLKEQLKKTSSEKAEMTAKFEKLSAICRSQ 231
           NSFVADF+     +G N   KE  LEAE+  LK++LK+T SEKAE+TAKFEKLSAICRSQ
Sbjct: 443 NSFVADFDTTKFDNG-NKPGKEEALEAEIQRLKDELKQTKSEKAEITAKFEKLSAICRSQ 501

Query: 232 RQEIQELKRTLAETTP------------PSSKVSSRLPDSGPQRKEKIEGTVWELEQGML 279
           RQE+Q+LK+TLA  +             PS  + S    S P R +K+EGT+WEL+Q   
Sbjct: 502 RQELQDLKQTLASKSASPSPSRDSSQNQPSPGMHSM--SSTPSR-DKMEGTMWELQQDRS 558

Query: 280 ANSLPSSEAKTWQAFPDPKSQPAQVRPKVDHSTNGAQN-LARNANSRQSP---------D 329
             S  SS+  +WQ F D      + +P ++ ++ G  N + ++  +R  P         +
Sbjct: 559 NWSTGSSDTNSWQPFSD------EAKPVMESASKGNNNTINQSVRTRSKPASAAGTQGFE 612

Query: 330 GWGFGPDSFRTSPGSTAAQINRPTAQ-----GSSSQRFSSGAAK---KVEQPSGWAGF 379
            WGF  +SFR +  S AA     T +      S+SQR+ +   +   K  QP+GWAGF
Sbjct: 613 PWGFETESFRAAATSAAATSASGTQRSMGSGNSTSQRYGNSKMRENQKTAQPAGWAGF 670



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.305    0.121    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,174,184
Number of extensions: 342678
Number of successful extensions: 1328
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1329
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 279
Effective length of database: 8,364,969
Effective search space: 2333826351
Effective search space used: 2333826351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 112 (47.8 bits)