BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0591600 Os02g0591600|AK102016
         (475 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12920.2  | chr5:4077917-4082585 REVERSE LENGTH=573            364   e-101

>AT5G12920.2 | chr5:4077917-4082585 REVERSE LENGTH=573
          Length = 572

 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/492 (41%), Positives = 286/492 (58%), Gaps = 59/492 (11%)

Query: 27  WSRVAAELDGRIDARFRHRESVRLRDSFSEIRTFSHNYYMEGQERCTTYMNRVVNDSVLG 86
           W R   E++GR+D+ +RH    R+  S+SEI  FSH Y++  +  C T+M ++   S+  
Sbjct: 74  WKRSLIEVNGRLDSAYRHELYSRVAHSYSEIGKFSHFYHL-NENPCITHMMQI--QSLYQ 130

Query: 87  FQAVREGISAMEFDKK--------------------------------GIYLASVTASGC 114
              +R G++ ++FD +                                GI+L SVT SGC
Sbjct: 131 CPTMR-GVAGLDFDNRVRSLINTFGLVSVHVQCYFIISDLCLRDSSHQGIFLVSVTRSGC 189

Query: 115 LTVHDFETLYC-STYGPSRGLPDESSNYLLHIS--NSMPLCAVRWNPANQDEIVCVSRQT 171
           L VHDFE+LYC S  GP  G  ++ S +++H S          RWNP+NQ+E+ C SR+ 
Sbjct: 190 LMVHDFESLYCQSKLGP--GSAEDESKHVVHFSYPPGREFDVARWNPSNQNEVACTSRKH 247

Query: 172 DMVLLFDIGCVSSTPTEILRKGRSRYPVLSEFRKGLTDVAFSSDDKSWLFASGLDGAVFM 231
           D VL+FDI  +S  PTE+L+  +    +  +  +GL+DVA +SD+ S +F+    G V +
Sbjct: 248 DQVLIFDISYMSPKPTEVLQTRQKLSIIGRKISRGLSDVAITSDEDSRIFSPDTLGMVHV 307

Query: 232 WDMRLSKKHCLELIGHPESQFSSVKLNIDNRTVFAATKEGTVHAWDLRGGRASAAFQSHN 291
           WD R     C+EL         S+++ +DN+T+F A KEG +H WDLRGGR S+AFQS  
Sbjct: 308 WDRRAGVSPCIELSTDRYDSIKSIQIYVDNQTIFGAGKEGIIHIWDLRGGRNSSAFQSRK 367

Query: 292 EVQ---------------QLSSVKISTLLGKIPSLKDQTNIVSSEILSIDFNPSCSYQLA 336
           +V                 L+S+ ++  L KI SLK Q+ IV  EI SID NPS  +QLA
Sbjct: 368 DVSLTRGELELAMAMSQLPLASLHLAPKLQKIASLKAQSEIVPKEIHSIDVNPSSPHQLA 427

Query: 337 FHLDNGWSGALNINTLSVSHLHCPPPDWLEHMNFMWQKLHRKPTWLPTSSIYAVGSASNT 396
           FHLD+GWSG L+I    V+H+HCPPP WL+  N     + RKP+WLPTSSIY VGS S  
Sbjct: 428 FHLDDGWSGVLDIYKSEVTHVHCPPPAWLDGSNSSADLILRKPSWLPTSSIYVVGSMSEK 487

Query: 397 VGMHLLDFHPDTSSACHVDYNEEIRGSDEKKPA--ANKFIPSSQRVVSCAAHPFCHTILA 454
            G+H+LDFHP + S CHVDY+E+ + ++++      NKF+  S+ V  CAAHP    I+A
Sbjct: 488 -GIHVLDFHPSSRSPCHVDYDEDTQRNEKRDKCNHRNKFVSLSETVTGCAAHPLNGMIVA 546

Query: 455 GTQFSSLLVLSQ 466
           GTQ SSLL+++Q
Sbjct: 547 GTQNSSLLLIAQ 558



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,067,200
Number of extensions: 422035
Number of successful extensions: 1269
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1277
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 373
Effective length of database: 8,310,137
Effective search space: 3099681101
Effective search space used: 3099681101
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)