BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0590000 Os02g0590000|Os02g0590000
         (234 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27480.1  | chr1:9544607-9546168 FORWARD LENGTH=433             76   2e-14

>AT1G27480.1 | chr1:9544607-9546168 FORWARD LENGTH=433
          Length = 432

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 4/177 (2%)

Query: 60  ALSRPTYMLRDWLEELRYRDGDTLFGAPYDFRYAPPVPGQTSEVYSRYFDELMAPVEAAT 119
           A S   ++++   ++  Y +  T+ GAPYDFRY     G  S V S++  +L   VE  +
Sbjct: 136 ATSYMEHLVKALEKKCGYVNDQTILGAPYDFRYGLAASGHPSRVASQFLQDLKQLVEKTS 195

Query: 120 KKKRKKAVI-VGHSYGGMVAVEFIPSTPRAWQGEHIERLI-LVAPTLPYXXXXXXXXXXX 177
            +   K VI + HS GG+  + F+  T  +W+ ++I+  + L AP               
Sbjct: 196 SENEGKPVILLSHSLGGLFVLHFLNRTTPSWRRKYIKHFVALAAPWGGTISQMKTFASGN 255

Query: 178 XXXXXXXXXXXVRPMWRSFESAMANFPSPAVFG--REPLVITKKRNYSAYVMEDFLA 232
                      VR   R+ ES     PS  VF    +PLV+T + NY+AY M+ F A
Sbjct: 256 TLGVPLVNPLLVRRHQRTSESNQWLLPSTKVFHDRTKPLVVTPQVNYTAYEMDRFFA 312



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,681,323
Number of extensions: 124881
Number of successful extensions: 336
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 139
Effective length of database: 8,502,049
Effective search space: 1181784811
Effective search space used: 1181784811
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)