BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0589000 Os02g0589000|AK066288
         (435 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27480.1  | chr1:9544607-9546168 FORWARD LENGTH=433            241   5e-64

>AT1G27480.1 | chr1:9544607-9546168 FORWARD LENGTH=433
          Length = 432

 Score =  241 bits (616), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 144/408 (35%), Positives = 219/408 (53%), Gaps = 26/408 (6%)

Query: 36  QDDAGELHPIFLVPGATCSNVEARLTEAYRPSAAHCGA------MKGKGWFGLWENNTEL 89
           Q     ++P+ LVPG   + +E RL   Y+PS+  C +       K  GWF LW +   L
Sbjct: 25  QAVGSNVYPLILVPGNGGNQLEVRLDREYKPSSVWCSSWLYPIHKKSGGWFRLWFDAAVL 84

Query: 90  QAHDYAECFQEQMALVYDPAANEYRNLPGVDTRVPNFGSVRSFGSKD--VFNPEWCLASL 147
            +  +  CF ++M L YDP  ++Y+N PGV TRVP+FGS +S    D  + +    +  L
Sbjct: 85  LS-PFTRCFSDRMMLYYDPDLDDYQNAPGVQTRVPHFGSTKSLLYLDPRLRDATSYMEHL 143

Query: 148 IGALEE-MGYRDGDNMYGVPYDIRYAPPIPGQASQVYSRHFREFMELVETASEKQHHNKK 206
           + ALE+  GY +   + G PYD RY     G  S+V S+  ++  +LVE  S  ++  K 
Sbjct: 144 VKALEKKCGYVNDQTILGAPYDFRYGLAASGHPSRVASQFLQDLKQLVEKTSS-ENEGKP 202

Query: 207 AIILGHSLGGMVALEFVRNTPSAWRDKYIEHLFLVAPTLSTGFVPTVRNLVSGPKDLLHV 266
            I+L HSLGG+  L F+  T  +WR KYI+H   +A     G +  ++   SG  + L V
Sbjct: 203 VILLSHSLGGLFVLHFLNRTTPSWRRKYIKHFVALAAPWG-GTISQMKTFASG--NTLGV 259

Query: 267 ANTTALSLRPMWRSFETSIVNVPSPGVFGH--EPIVVTKRRNYSAYDLEDLLAAIGFSDG 324
                L +R   R+ E++   +PS  VF    +P+VVT + NY+AY+++   A IGFS G
Sbjct: 260 PLVNPLLVRRHQRTSESNQWLLPSTKVFHDRTKPLVVTPQVNYTAYEMDRFFADIGFSQG 319

Query: 325 IEPFRRRTIARMNYIEAPMVPLTCINAVGKRTPRQFVYWDGNFDDEPTEIVYGDGDDSIN 384
           + P++ R +     +  P VP+TCI   G  TP   +Y  G FD +P EI YGDGD ++N
Sbjct: 320 VVPYKTRVLPLTEELMTPGVPVTCIYGRGVDTPEVLMYGKGGFDKQP-EIKYGDGDGTVN 378

Query: 385 LVSMLAFDEEMRRQPGQKGRFKSIKLNNASHGSILTDEWALRRVMQEI 432
           L S+ A   +            +++++  SH SIL DE AL+ +M++I
Sbjct: 379 LASLAALKVD---------SLNTVEIDGVSHTSILKDEIALKEIMKQI 417



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,842,898
Number of extensions: 426451
Number of successful extensions: 932
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 334
Effective length of database: 8,337,553
Effective search space: 2784742702
Effective search space used: 2784742702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)