BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0585200 Os02g0585200|Os02g0585200
(133 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07600.1 | chr3:2424300-2424954 REVERSE LENGTH=158 61 1e-10
AT5G48290.1 | chr5:19568980-19569658 FORWARD LENGTH=182 60 3e-10
AT3G20180.1 | chr3:7043385-7043841 REVERSE LENGTH=119 52 7e-08
AT4G05030.1 | chr4:2576790-2577974 REVERSE LENGTH=111 52 9e-08
>AT3G07600.1 | chr3:2424300-2424954 REVERSE LENGTH=158
Length = 157
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 1 MVQKIVIKVHMSSDKCRRKAMALAASTGGVVSVELAGDDRSKVVVVG-DVDSIGLTNALR 59
M QKI+I++ M+ D R KAM A GV +VE+ GD R+++ V G +VD I L N LR
Sbjct: 1 MKQKILIRIAMTDDTTRAKAMKTAVQFKGVNAVEIKGDHRNQIEVTGVEVDMIALINTLR 60
Query: 60 RKVDGSAELVEVS 72
+KV AELV V+
Sbjct: 61 KKV-AFAELVSVA 72
>AT5G48290.1 | chr5:19568980-19569658 FORWARD LENGTH=182
Length = 181
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 1 MVQKIVIKVHMSSDKCRRKAMALAASTGGVVSVELAGDDRSKVVVVG-DVDSIGLTNALR 59
M QKI+I+V M+ DK R KAM A GV +VE+ GD R+++ V G +VD I L LR
Sbjct: 1 MKQKILIRVTMTDDKTRAKAMTKAVQFKGVSAVEIKGDHRNQIEVTGVEVDMIPLIQILR 60
Query: 60 RKVDGSAELVEVS 72
+KV AELV V+
Sbjct: 61 KKV-AFAELVSVT 72
>AT3G20180.1 | chr3:7043385-7043841 REVERSE LENGTH=119
Length = 118
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 7 IKVHMSSDKCRRKAMALAASTGGVVSVELAGDDRSKVVVVGD-VDSIGLTNALRRK 61
IK+ ++S+KCR+KAM +A + GV SV + G+ + ++VVVGD VDS L ALR+K
Sbjct: 3 IKLSVNSEKCRKKAMQVAVAADGVTSVAMEGEFQDELVVVGDGVDSASLIMALRKK 58
>AT4G05030.1 | chr4:2576790-2577974 REVERSE LENGTH=111
Length = 110
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 1 MVQKIVIKVHMSSDKCRRKAMALAASTGGVVSVELAGDDRSKVVVVGD-VDSIGLTNALR 59
++ KI++ V M DKCR +A+ + A T GV V + G+++ KVVV+G+ VD+ L LR
Sbjct: 34 VLTKILMSVSMRCDKCRSEALKIGAKTTGVTFVGIEGEEKDKVVVIGEGVDAACLVVRLR 93
Query: 60 RKVDGSAELVEVSD 73
+KV G A+++ V+D
Sbjct: 94 KKV-GFADIISVTD 106
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,726,576
Number of extensions: 39785
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 4
Length of query: 133
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 45
Effective length of database: 8,693,961
Effective search space: 391228245
Effective search space used: 391228245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)