BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0585100 Os02g0585100|Os02g0585100
         (170 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48290.1  | chr5:19568980-19569658 FORWARD LENGTH=182           47   4e-06

>AT5G48290.1 | chr5:19568980-19569658 FORWARD LENGTH=182
          Length = 181

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 62  MAQKIVIKVHMGSDKCRRKAMSLVAATGGVVSVELAGDDRSKXXXX-XXXXXXKLTSLLR 120
           M QKI+I+V M  DK R KAM+      GV +VE+ GD R++            L  +LR
Sbjct: 1   MKQKILIRVTMTDDKTRAKAMTKAVQFKGVSAVEIKGDHRNQIEVTGVEVDMIPLIQILR 60

Query: 121 RKVGPAELVEV 131
           +KV  AELV V
Sbjct: 61  KKVAFAELVSV 71



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.127    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,274,094
Number of extensions: 67768
Number of successful extensions: 156
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 79
Effective length of database: 8,611,713
Effective search space: 680325327
Effective search space used: 680325327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 108 (46.2 bits)