BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0574600 Os02g0574600|AK059246
(310 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G39860.1 | chr4:18499909-18501472 FORWARD LENGTH=300 340 7e-94
AT1G35780.1 | chr1:13277778-13280113 REVERSE LENGTH=287 254 3e-68
AT1G78150.3 | chr1:29404996-29406341 FORWARD LENGTH=304 243 9e-65
AT2G22270.1 | chr2:9463765-9465282 FORWARD LENGTH=329 211 5e-55
>AT4G39860.1 | chr4:18499909-18501472 FORWARD LENGTH=300
Length = 299
Score = 340 bits (871), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 185/310 (59%), Positives = 214/310 (69%), Gaps = 11/310 (3%)
Query: 1 MERAVPVRKTHASTAGLLSWSEXXXXXXXXXXXXXXXXXXXXXXXXXXGGITPAMFGAPV 60
MER PVR H STA LLSWSE GI+ + G +
Sbjct: 1 MERNTPVRNPHTSTADLLSWSETPPPPHHSTPSAARSHQPSD-------GISKILGGGQI 53
Query: 61 TDLEAEDLTKRKMCSGSKMKEMTGSGIFSAQGANGDSETGSGDSNPPSKTSLRMYQQTVT 120
TD EA+ L K K CSG K+KEMTGSGIF+ +G G SE+ D+ KT LR YQQT+
Sbjct: 54 TDEEAQSLNKLKNCSGYKLKEMTGSGIFTDKGKVG-SES---DATTDPKTGLRYYQQTLN 109
Query: 121 GISQISFSAEGSVSPKKPSSLPEVAKQRELSGTLESEADAKLKKQNSEAKSKELSGSDIF 180
G+SQISFSA+G+VSPKKP++L EVAKQRELSG L +EAD K KQ S AK +E+SG DIF
Sbjct: 110 GMSQISFSADGNVSPKKPTTLTEVAKQRELSGNLLTEADLKSNKQISSAKIEEISGHDIF 169
Query: 181 GPPPEIPSRPLAARNLELQGNLDFALPQPRSIHTSVKVSNPAGGPSNIMFGEEPAVKTAK 240
PP EI R L A E +GN D P PR++ TSVKVSNPAGG SNI+F EEP VKT+K
Sbjct: 170 APPSEIQPRSLVAAQQEARGNRDMGEPAPRNLRTSVKVSNPAGGQSNILFSEEPVVKTSK 229
Query: 241 KIHNQKFHELTGNNIFKEEAPPGSAEKSLSTAKLKEMSGSNIFADGKVASRDYFGGVRKP 300
KIHNQKF ELTGN IFK + PGSA+K LS+AKL+EMSG+NIFADGK SRDYFGGVRKP
Sbjct: 230 KIHNQKFQELTGNGIFKGDESPGSADKQLSSAKLREMSGNNIFADGKSESRDYFGGVRKP 289
Query: 301 PGGGSSIALV 310
PGG SSI+LV
Sbjct: 290 PGGESSISLV 299
>AT1G35780.1 | chr1:13277778-13280113 REVERSE LENGTH=287
Length = 286
Score = 254 bits (650), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 155/314 (49%), Positives = 185/314 (58%), Gaps = 32/314 (10%)
Query: 1 MERAVPVRKTHASTAGLLSWSEXXXXXXXXXXXXXXXXXXXXXXXXXXGGITPAMFGAPV 60
ME+ PVRK H STA LL+W E GI+ +FG V
Sbjct: 1 MEKNTPVRKPHMSTADLLTWPENQPFESPAAVSSRSAARSHQPS----DGISKVVFGGQV 56
Query: 61 TDLEAEDLTKRKMCSGSKMKEMTGSGIFSAQGANGDSETGSGDSNPPSKTSLRMYQQTVT 120
TD E E L KRK CS KMKE+TGSGIFS N DSE S +S K+ R +QQ
Sbjct: 57 TDEEVESLNKRKPCSNYKMKEITGSGIFSVYEENDDSELASANSATNGKS--RTFQQPPA 114
Query: 121 GI-SQISFSAEGSVSPKKPSSLPEVAKQRELSGTLESEADAKLKKQNSEAKSKELSGSDI 179
I S ISF E V+PKKP+++PEVAKQRELSGTLE ++DAKL KQ S+AK KELSG +I
Sbjct: 115 AIMSHISFGEEEIVTPKKPATVPEVAKQRELSGTLEYQSDAKLNKQFSDAKCKELSGHNI 174
Query: 180 FGPPPEIPSRPLAARNLELQGNLDFALPQPRSIHTSVKVSNPAGGPSNIMFGEEPAVKTA 239
F PPPEI RP R L + N D + P G +KTA
Sbjct: 175 FAPPPEIKLRP-TVRALAYKDNFDLGESD----------TKPDG-----------ELKTA 212
Query: 240 KKIHNQKFHELTGNNIFKEEA---PPGSAEKSLSTAKLKEMSGSNIFADGKVASRDYFGG 296
KKI ++KF +L+GNN+FK + +AE+ LSTAKLKE+SG++IFAD K SRDYFGG
Sbjct: 213 KKIADRKFTDLSGNNVFKSDVSSPSSATAERLLSTAKLKEISGNDIFADAKAQSRDYFGG 272
Query: 297 VRKPPGGGSSIALV 310
VRKPPGG SSIALV
Sbjct: 273 VRKPPGGESSIALV 286
>AT1G78150.3 | chr1:29404996-29406341 FORWARD LENGTH=304
Length = 303
Score = 243 bits (620), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 151/339 (44%), Positives = 187/339 (55%), Gaps = 65/339 (19%)
Query: 1 MERAVPVRKTHASTAGLLSWSEXXXXXXXXXXXXXXXXXXXXXXXXXXGGITPAMFGAPV 60
MER+ PVRK H STA LL+WS GI+ +FG V
Sbjct: 1 MERSTPVRKPHTSTADLLTWS-----EVPPPDSPSSASRSAVRSHQPSDGISKVVFGGQV 55
Query: 61 TDLEAEDLTK-----------------------------RKMCSGSKMKEMTGSGIFSAQ 91
TD E E L + RK CS KMKE+TGSGIFS
Sbjct: 56 TDEEVESLNRRILDDAFDSFMRLVIYTNVKTCENVYDVIRKPCSEHKMKEITGSGIFSRN 115
Query: 92 GANGDSETGSGDSNPPSKTSLRMYQQTVTGISQISFSAEGSVSPKKPSSLPEVAKQRELS 151
+ SE L +YQQ V GISQISF E ++SPKKP+++PEVAKQRELS
Sbjct: 116 EKDDASE------------PLPVYQQAVNGISQISFGEEENLSPKKPATVPEVAKQRELS 163
Query: 152 GTLESEADAKLKKQNSEAKSKELSGSDIFGPPPEIPSRPLAARNLELQGNLDFALPQPRS 211
GT+E+E+ KL+KQ S+AK KE+SG +IF PPPEI R R L L+ N +
Sbjct: 164 GTMENESANKLQKQLSDAKYKEISGQNIFAPPPEIKPRSGTNRALALKDNFNL------- 216
Query: 212 IHTSVKVSNPAGGPSNIMFGEEPAVKTAKKIHNQKFHELTGNNIFKEEAPPGSAEKSLST 271
G + E+ +VKTAKKI+++KF EL+GN+IFK +A + EK LS
Sbjct: 217 ------------GAESQTAEEDSSVKTAKKIYDKKFAELSGNDIFKGDAASSNVEKHLSQ 264
Query: 272 AKLKEMSGSNIFADGKVASRDYFGGVRKPPGGGSSIALV 310
AKLKE+ G+NIFADGKV +RDY GGVRKPPGG +SIALV
Sbjct: 265 AKLKEIGGNNIFADGKVEARDYLGGVRKPPGGETSIALV 303
>AT2G22270.1 | chr2:9463765-9465282 FORWARD LENGTH=329
Length = 328
Score = 211 bits (536), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 144/330 (43%), Positives = 181/330 (54%), Gaps = 40/330 (12%)
Query: 11 HASTAGLLSWSEXXXXXXXXXXXXXXXXXXXXXXXXXXGG-ITPAMFGAPVTDLEAEDLT 69
H STA LLSWSE GG IT A + T +++
Sbjct: 9 HHSTADLLSWSEIRRPDYSTAANRSNQPSDGMNDVLGGGGQITNAETKSLNT-----NVS 63
Query: 70 KRKMCSGSKMKEMTGSGIFSAQGA---------------------NGDSETGS---GDSN 105
RK CSG K+KEMTGS IFS G +G+ + G +
Sbjct: 64 HRKNCSGHKLKEMTGSDIFSDDGKYDPNHQTRIHYHQDQLSQISFSGEENATTPMNGKDD 123
Query: 106 PPSKTSLRMYQQTVTGISQISFSAEGSVSPKKPSSLPEVAKQRELSGTLESEADAKL-KK 164
P +T + +Q SQISFS E +V+PKKP++L E AKQ+ELS T+E++AD+K KK
Sbjct: 124 PNHQTRIHYHQDQR---SQISFSGEENVTPKKPTTLNEAAKQKELSRTVETQADSKCKKK 180
Query: 165 QNSEAKSKELSGSDIFGPPPEIPSRPL-AARNLELQGNLDFALPQPRSIHTSVKVSNPAG 223
Q S K+K +SG DIF P P R A E++GN + PRS SVK SN G
Sbjct: 181 QISNTKNKAMSGHDIFASPESQPRRLFGGATQSEVKGNKNTEESAPRSSRASVKTSN--G 238
Query: 224 GPSNIMFGEEPAVKTAKKIHNQK--FHELTGNNIFK-EEAPPGSAEKSLSTAKLKEMSGS 280
SN +F EE VK++KKIHNQK F LT N IFK ++ PPG +EK S+AK +EMSG
Sbjct: 239 QSSNRLFSEEHVVKSSKKIHNQKSQFQGLTSNGIFKSDKIPPGYSEKMQSSAKKREMSGH 298
Query: 281 NIFADGKVASRDYFGGVRKPPGGGSSIALV 310
NIFADGK RDY+GG R+PPGG SSI+LV
Sbjct: 299 NIFADGKSEYRDYYGGARRPPGGESSISLV 328
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.307 0.126 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,740,081
Number of extensions: 288445
Number of successful extensions: 893
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 849
Number of HSP's successfully gapped: 4
Length of query: 310
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 212
Effective length of database: 8,419,801
Effective search space: 1784997812
Effective search space used: 1784997812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 111 (47.4 bits)