BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0566900 Os02g0566900|AK068953
         (142 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G36980.1  | chr1:14025084-14026727 FORWARD LENGTH=136          147   2e-36

>AT1G36980.1 | chr1:14025084-14026727 FORWARD LENGTH=136
          Length = 135

 Score =  147 bits (370), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/107 (64%), Positives = 80/107 (74%), Gaps = 3/107 (2%)

Query: 35  CSAAAVPFLHYLPGLFASFAALMFNCVKREDANYNYYSPYDDSEWRLKLWLXXXXXXXXX 94
           CS+  VPF+HYLPG+FAS  ALMFNCV++ED +Y   SPYD+ EWRLKLWL         
Sbjct: 32  CSSIQVPFVHYLPGIFASLGALMFNCVRKEDIDY---SPYDEGEWRLKLWLFIAYVVAFV 88

Query: 95  XLAGAVGFLVQDALTDTGPSAWTGVAGVLQSVFVLISGLMYWTCHSE 141
            LA +VG L+QD++  TGPS WTGVAGV Q VFVLISGLMYWT HSE
Sbjct: 89  SLAASVGLLIQDSVVKTGPSTWTGVAGVFQCVFVLISGLMYWTSHSE 135



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,260,022
Number of extensions: 70675
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 106 (45.4 bits)